View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0874_low_9 (Length: 519)
Name: NF0874_low_9
Description: NF0874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0874_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 99 - 490
Target Start/End: Original strand, 35234236 - 35234623
Alignment:
| Q |
99 |
attatactacgtcaattattagtcatatataaattagtcaaatgaaaccgtctatgcaattagggccacagggnnnnnnnnccttcataaatcaagccac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35234236 |
attatactacgtcaattattagtcatatataaattagtcaaatgaaaccgtctatgcaattagggccacaggtttttttttccttcataaatcaagccac |
35234335 |
T |
|
| Q |
199 |
actatcctatgtcatgcgataacttataaaatgccctaattcgcctccaatatttcacagaatttctttggaagtaaacaaaagttgcttatgaatttgc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35234336 |
actatcctatgtcatgcgataacttataaaatgccctaattcgcctccaatatttcacagaatttctttggaagtaagcaaaagttgcttatgaatttgc |
35234435 |
T |
|
| Q |
299 |
aagtacatacatggttctgttactatactatatatctgtataagggaactatattttatttctttaccttgccttcatcaaccaattactgtgtaaaaga |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35234436 |
aagtacatacatggttctgttactatactatatatctgtataagggaactatattttatttccttaccttgccttcatcaaccaattactgtgtaaaaga |
35234535 |
T |
|
| Q |
399 |
aggaagagattaggctgtatcggtttaatttttcaaggattatatatattaaaatatattcttattttcctatggaactaaactggacttca |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35234536 |
aggaagagattaggctgtatcggtttaatttttcaaggat----tatgttaaaatatattcttattttcctatggaactaaactggacttca |
35234623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1758 times since January 2019
Visitors: 6149