View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_11 (Length: 515)
Name: NF0875_high_11
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 30 - 507
Target Start/End: Complemental strand, 43965895 - 43965418
Alignment:
| Q |
30 |
aatacatctttcttcttcaatcaaagttcatacaaatgcaaactctgggagaaaagcattgattcatttctgttttcggtttcaatcaggaaccaagaaa |
129 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965895 |
aatacatctttcctcttcaaccaaagttcatacaaatgcaaactctgggagaaaagcattgattcatttctgttttcggtttcaatcaggaaccaagaaa |
43965796 |
T |
|
| Q |
130 |
atgccgacgtacaagatcagaggaatcgacgttgattttccctatgaagcctatgattcccagctcgtttacatggacaaggtcatgcaatcgcttcaag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965795 |
atgccgacgtacaagatcagaggaatcgacgttgattttccctatgaagcctatgattcccagctcgtttacatggacaaggtcatgcaatcgcttcaag |
43965696 |
T |
|
| Q |
230 |
aggtacaatcgtgcctttttatttaagctaataatcgatttttgctttcaaattatcattagattgatgtgtcagggtaaatagcttaattaagaattta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965695 |
aggtacaatcgtgcctttttatttaagctaataatcgatttttgctttcaaagtatcattagattgatgtgtcagggtaaatagcttaattaagaattta |
43965596 |
T |
|
| Q |
330 |
ttcgttaagtcattctagaatgtttaagtgtttgttgatctatgaagtgcgaacacagacacagagacagacacgtcgactacaccaatgataatttgtg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965595 |
ttcgttaagtcattctagaatgtttaagtgtttgttgatctatgaagtgcgaacacagacacagagacagacacgtcgactacaccaatgataatttgtg |
43965496 |
T |
|
| Q |
430 |
aaaatgatacaactcaattaatcatatatgtgggtgtcagacacccacactcgtcggatgaagaagagtgtctgtgct |
507 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
43965495 |
aaaatgatacaactcaattaatcatatatgtcggtgtcagacatccacactcgtccgatgaagaagagtgtctgtgct |
43965418 |
T |
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