View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_12 (Length: 512)
Name: NF0875_high_12
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_12 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 30 - 497
Target Start/End: Complemental strand, 14180710 - 14180243
Alignment:
| Q |
30 |
agaacaacattgcatctgcaatctcagtgtcaaatcatggtataatgtatgtgcatatacaaatccagattcaaattcaaaaggtggtaataacattagt |
129 |
Q |
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| T |
14180710 |
agaacaacattgcatctgcaatctcagtgtcaaatcatggtataatgtatgtgcatatacaaatccagattcaaattcaaaaggtggtaataacattagt |
14180611 |
T |
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| Q |
130 |
aggagtaaatattcttacccagttggataaattcatgttttcatcttgcaagattctttcctgaatcacaacatatatacaattattaatgatgtgtcta |
229 |
Q |
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| T |
14180610 |
aggagtaaatattcttacccagttggataaattcatgttttcatcttgcaagattctttcctgaatcacaacatatatacaattattaatgatgtgtcta |
14180511 |
T |
|
| Q |
230 |
ttaatgatcaatgatataggtgagtacctatatgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgt |
329 |
Q |
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| T |
14180510 |
ttaatgatcaatgatataggtgagtacctatatgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgt |
14180411 |
T |
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| Q |
330 |
tgcatgagctcattctgtattaaaaataatgtgtcaataatttgtgttgaatgataatcacgaaaattaaaagagataggagtaatattgattaaaatta |
429 |
Q |
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| T |
14180410 |
tgcatgagctcattctgtattgaaaataatgtgtcaataatttgtgttgaatgataatcacgaaaattaaaagagataggaataatattgattaaaatta |
14180311 |
T |
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| Q |
430 |
acaagaagtactctgatctaattacatagaaaattaatacacccaatccctatgtttcattgatatat |
497 |
Q |
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| T |
14180310 |
acaagaagtactctgatctaattacatagaaaattaatacacccaatccctatgttttattgatatat |
14180243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 153 - 396
Target Start/End: Original strand, 95345 - 95571
Alignment:
| Q |
153 |
tggataaattcatgttttcatcttgcaagattctttcctgaatcacaa---catatatacaattattaatgatgtgtctattaatgatcaatgatatagg |
249 |
Q |
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| T |
95345 |
tggataaattgatattttcatcttgcaagattctttcctgaatcacaataacatatatacaattatggatcatgtgtctattaatagtcaatgat----- |
95439 |
T |
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| Q |
250 |
tgagtacctatatgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtat |
349 |
Q |
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||| |||||||| |||||||||||||||||||||||||||| | ||| || ||||| || ||||||||||||||||| || |
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| T |
95440 |
---------------taactaaagagagggttagtttaattatatatgtcaccttcctgatcatattatcaatttgctgctgcatgagctcattctgcat |
95524 |
T |
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| Q |
350 |
taaaaataatgtgtcaataatttgtgttgaatgataatcacgaaaat |
396 |
Q |
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| T |
95525 |
taaaaataatgtgtcaataatttgtgttgaaggatagtcatgaaaat |
95571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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