View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_14 (Length: 487)
Name: NF0875_high_14
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 105 - 455
Target Start/End: Original strand, 9776440 - 9776790
Alignment:
| Q |
105 |
tgaatatccctagcagtacacaaagacggcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaat |
204 |
Q |
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| T |
9776440 |
tgaatatccctagcagtacacaaagacggcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaat |
9776539 |
T |
|
| Q |
205 |
atgcagcaacatcataagcctttgcagccatctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacaccca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776540 |
atgcagcaacatcataagcctttgcagccatctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacaccca |
9776639 |
T |
|
| Q |
305 |
ttttccccaccgccttttcctgacgccgtggaaaaccggatgtctggttccgccacggccagattgggcggtgggattctttgttgttagggtttttact |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9776640 |
ttttccccaccgccttttcctgacgccgtggaaaaccggatgtctggttccgccacggccagattgggcggcgggattctttgttgttagggtttttact |
9776739 |
T |
|
| Q |
405 |
gccacgtcaggtttggttgtgaagttcaaatgttgttgatgctccattcag |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9776740 |
gccacgtcaggtttggttgtgaagttcaaatgttgttgctgctccattcag |
9776790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 41521749 - 41521694
Alignment:
| Q |
258 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
313 |
Q |
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| T |
41521749 |
agccaaattcttgatttttttcttggctctctaatctctgatacccatttgcccca |
41521694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 16357871 - 16357926
Alignment:
| Q |
258 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
313 |
Q |
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||||||||||||||||| ||||||||||| | ||| || || |||||||||||||| |
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| T |
16357871 |
agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca |
16357926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 3996430 - 3996488
Alignment:
| Q |
255 |
cctagccatattcttgacttttttcttgg-ctctctaatctctgacacccattttcccca |
313 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
3996430 |
cctagccaaattcttga-ttttttcttgggctctctaatttctgaaacccattttcccca |
3996488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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