View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_15 (Length: 480)
Name: NF0875_high_15
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 30 - 466
Target Start/End: Original strand, 48814551 - 48814986
Alignment:
| Q |
30 |
ccaactacatgccacatcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataatcaacttaccaagatcaatt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48814551 |
ccaactacatgccacatcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataatcaacttaccaagatcaatt |
48814650 |
T |
|
| Q |
130 |
attagcaaatgtacaaatcaaatnnnnnnnnntcatactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccggc |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48814651 |
attagcaaatgtacaaatcaaataaaaaaaa-tcatactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccagc |
48814749 |
T |
|
| Q |
230 |
ccatttttcagttctattataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagct |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48814750 |
ccatttttcagttctattataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagct |
48814849 |
T |
|
| Q |
330 |
ggaattgctgggatcaaacggtatccaacgtcgtttccaacgatagnnnnnnngtttggattgacaattgcaagttcacctggggcaagccctaaagtaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48814850 |
ggaattgctgggatcaaacggtatccgacgtcgtttccaacgatagtttttttgtttggattgacaattgcaagttcacctggggcaagccctagagtaa |
48814949 |
T |
|
| Q |
430 |
tttttgcatctgattcagtcttagcaatttgagtctc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
48814950 |
tttttgcatctgattcagtcttagcaatttgagtctc |
48814986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 466
Target Start/End: Complemental strand, 48835791 - 48835356
Alignment:
| Q |
30 |
ccaactacatgccacatcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataatcaacttaccaagatcaatt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
48835791 |
ccaactacatgccacatcacaatgtccttgttcacaatgtctctgttcctgcaaaaattccaaattaatcagtataataatcaacttacttagatcaatt |
48835692 |
T |
|
| Q |
130 |
attagcaaatgtacaaatcaaatnnnnnnnnntcatactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccggc |
229 |
Q |
| |
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| | ||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |
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| T |
48835691 |
aatttcaaattcacaaaaataa-attaagtaatcatactttttggtccaaacagctaatgtgtcatctccacggctatgatcaacataaagtccaccagc |
48835593 |
T |
|
| Q |
230 |
ccatttttcagttctattataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagct |
329 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
48835592 |
ccatttttcagttctattataaggtgcgacccaaacattataattagtaaatgcaccacgtatttgtggataatcatcttcagttaaaagtggatgagct |
48835493 |
T |
|
| Q |
330 |
ggaattgctgggatcaaacggtatccaacgtcgtttccaacgatagnnnnnnngtttggattgacaattgcaagttcacctggggcaagccctaaagtaa |
429 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || ||||| | || ||||||||| |||| |||||||||||||||||||||||| | || | |
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| T |
48835492 |
ggaattgctggaatcaaacggtatccaacttcattaccaacaacagtttttttgtttggattaacaaatgcaagttcacctggggcaagcccaattgtta |
48835393 |
T |
|
| Q |
430 |
tttttgcatctgattcagtcttagcaatttgagtctc |
466 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||||| |
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|
| T |
48835392 |
tttttgcatctgattctgtcttaacagtttgagtctc |
48835356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 165 - 355
Target Start/End: Original strand, 48788250 - 48788440
Alignment:
| Q |
165 |
tactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccggcccatttttcagttctattataaggtgtgacccaaa |
264 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
48788250 |
tactgtttggtccaaacagctaaagtgtcatctccacgactatgatcaacataaagtccaccagcccatttttcagttctattataaggtgtgatccaaa |
48788349 |
T |
|
| Q |
265 |
cattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagctggaattgctgggatcaaacggtatcc |
355 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
48788350 |
cattataattagtgaaagcaccacgtatttgtgggtaatcatcttcggttagaagtggatgagctggaattgccggaatcaaacggtatcc |
48788440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 165 - 370
Target Start/End: Original strand, 15824285 - 15824490
Alignment:
| Q |
165 |
tactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccggcccatttttcagttctattataaggtgtgacccaaa |
264 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
15824285 |
tactgtttggtccaaacagctaaagtgtcatctccacgactatgatcaacatagagtccaccagcccatttttcagttctattataaggtgtgacccaaa |
15824384 |
T |
|
| Q |
265 |
cattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagctggaattgctgggatcaaacggtatccaacgtcgtt |
364 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||| | || ||| |
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|
| T |
15824385 |
cattataattggtaaatgcaccgcgtatttgcggataatcatcttcagttagaagtgaatgagcaggaattgctggaatcaaacggtatccgatgtggtt |
15824484 |
T |
|
| Q |
365 |
tccaac |
370 |
Q |
| |
|
|||||| |
|
|
| T |
15824485 |
tccaac |
15824490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 48797838 - 48797918
Alignment:
| Q |
30 |
ccaactacatgccacatcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48797838 |
ccaactacatgccacatcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataat |
48797918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 48788118 - 48788172
Alignment:
| Q |
30 |
ccaactacatgccacatcacaatgtccttgttcacaatgtctctattcctgcaaa |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48788118 |
ccaactacatgccacatcacaatgtccttgttcacaatgtttctattcctgcaaa |
48788172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 15824133 - 15824180
Alignment:
| Q |
33 |
actacatgccacatcacaatgtccttgttcacaatgtctctattcctg |
80 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
15824133 |
actacatgccacattactatgtccttgttcacaatgtctctattcctg |
15824180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 15824549 - 15824586
Alignment:
| Q |
429 |
atttttgcatctgattcagtcttagcaatttgagtctc |
466 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15824549 |
atttttgcatctgattcagtcttagcagtttgagtctc |
15824586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 15824213 - 15824248
Alignment:
| Q |
95 |
taattagtataataatcaacttaccaagatcaatta |
130 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15824213 |
taattagtataataatcaacttactaagatcaatta |
15824248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 48788514 - 48788551
Alignment:
| Q |
429 |
atttttgcatctgattcagtcttagcaatttgagtctc |
466 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
48788514 |
atttttgcatctgattctgtcttagcagtttgagtctc |
48788551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 47103663 - 47103766
Alignment:
| Q |
204 |
ctatgatcaacatatagtccaccggcccatttttcagttctattataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataat |
303 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| |||||| | || || ||||||||||| |||||||||||||| || ||||| | ||||||||||||| |
|
|
| T |
47103663 |
ctatgatcaacatataatcctcctgcccatttctcagttttgttgtatggtgtgacccacacattataattagtgaaagcacctctaatttgtggataat |
47103762 |
T |
|
| Q |
304 |
catc |
307 |
Q |
| |
|
|||| |
|
|
| T |
47103763 |
catc |
47103766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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