View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_16 (Length: 480)
Name: NF0875_high_16
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 32 - 473
Target Start/End: Complemental strand, 16177073 - 16176632
Alignment:
| Q |
32 |
aactattctatcaattaattggtgaataaaatcatgaagagaatacatttgaaatagctatgaatatcatacaaatttatcgtatttcctctaagatcaa |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16177073 |
aactattctatcaattaattggtgaataaaatcatgaagagaatgcatttgaaatagctatgaatatcatacaaatttattgtatttcctctaagatcaa |
16176974 |
T |
|
| Q |
132 |
attcaacgatcataggaacaaagacaaagaatcataccaaaggcatcaacacagttcccagaacccgttttactatatcgactaacacaccttttgttgc |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16176973 |
attcaacgatcataggaacaaagacaaagaatcataccaaaggcatcgacacaattcccagaacccgttttactatatcgactaacacaccttttgttgc |
16176874 |
T |
|
| Q |
232 |
aacattcatcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgttaatcctggtggtggcttatcaaaagtacaagtgca |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16176873 |
aacattcatcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgttaatcctggtggtggcttatcaaaagtacaagtgca |
16176774 |
T |
|
| Q |
332 |
taagttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatcttcttttgcacaactaccaacaatt |
431 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16176773 |
taagttgtagtatgaacatgatgatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatcttcttttgcacaactaccaacaatt |
16176674 |
T |
|
| Q |
432 |
tttgtgcattcaccttcaacctgtattaattgctctgtgctc |
473 |
Q |
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| T |
16176673 |
tttgtgcattcaccttctacctgtattaattgccctgtgctc |
16176632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 32 - 473
Target Start/End: Complemental strand, 16146720 - 16146279
Alignment:
| Q |
32 |
aactattctatcaattaattggtgaataaaatcatgaagagaatacatttgaaatagctatgaatatcatacaaatttatcgtatttcctctaagatcaa |
131 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||| |
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| T |
16146720 |
aactattctatcaattaattgatgaataaaatcatgaagataatacatttgaaatagctatgaatatcatacatacttattgtatttcctttaagatcaa |
16146621 |
T |
|
| Q |
132 |
attcaacgatcataggaacaaagacaaagaatcataccaaaggcatcaacacagttcccagaacccgttttactatatcgactaacacaccttttgttgc |
231 |
Q |
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| ||||||||||||||||||||| |||||| ||||| ||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
16146620 |
actcaacgatcataggaacaaaggcaaagactcatatcaagggcatcaacacacttcccaacacccgttttactatatctactaacacaccttttgttgc |
16146521 |
T |
|
| Q |
232 |
aacattcatcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgttaatcctggtggtggcttatcaaaagtacaagtgca |
331 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||| |||| ||||||||||||| |
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| T |
16146520 |
aacaatcatcttgacagtcaccagtgcaaattcccatcccaataccacagttaccaggtggtgtcaatccaggtggtggctgatcataagtacaagtgca |
16146421 |
T |
|
| Q |
332 |
taagttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatcttcttttgcacaactaccaacaatt |
431 |
Q |
| |
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|||||| ||| |||||||||| |||||||||||| ||| ||| ||||| | || | ||| || | |||||||| | ||||||| |||||||||||| |
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| T |
16146420 |
taagttatagaatgaacatgacgatcctaaaacacgaacgcctcttgcaaaggaattacagtgttcagaacaatcttgtcttgcacagctaccaacaatt |
16146321 |
T |
|
| Q |
432 |
tttgtgcattcaccttcaacctgtattaattgctctgtgctc |
473 |
Q |
| |
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||||||||||||||||| ||||||||||||||| || ||||| |
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|
| T |
16146320 |
tttgtgcattcaccttctacctgtattaattgccctatgctc |
16146279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 40 - 473
Target Start/End: Complemental strand, 16155349 - 16154911
Alignment:
| Q |
40 |
tatcaattaattggtgaataaaatcatgaagagaatacatttgaaatagctatgaatat--catacaaatttatcgtatttcctctaagatcaaattcaa |
137 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||||||||||| |||| |||||| |||| | |||| ||||||||| |||||||||| |||| |
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| T |
16155349 |
tatcaattaattgatgaataaaatcacgaagagaatacatttgaaatcgctaggaatatatcatatatgcttattgtatttcctttaagatcaaactcaa |
16155250 |
T |
|
| Q |
138 |
cgatcataggaacaaagacaaagaatcataccaaaggcatcaacacagttcccagaacccgttttactatatcgactaacacaccttttgttgcaacatt |
237 |
Q |
| |
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||| |||| ||||| |||| || |||| |||||||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||||||| | |
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| T |
16155249 |
cgaagatagttacaaatgcaaaaaagcatatgaaaggcattaacacagaccccagcacctgttttactatatctactaacacactttttgttgcaacaat |
16155150 |
T |
|
| Q |
238 |
catcttgacagtcaccattgcaaattcccatcccaataatacaattaccaggtggtgtt---aatcctggtggtggcttatcaaaagtacaagtgcataa |
334 |
Q |
| |
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|| | |||||||| || |||||||||||||||||||| ||||| ||||| ||||| | ||| |||||||||||| |||| || ||||||||||||| |
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| T |
16155149 |
cacttagacagtcatcagtgcaaattcccatcccaatatcacaatgaccagttggtgatgataatgctggtggtggctgatcataactacaagtgcataa |
16155050 |
T |
|
| Q |
335 |
gttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatcttcttttgcacaactaccaacaattttt |
434 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
16155049 |
gttgtagaatgaacatgaggatcctaaaacagcaacaccttttccatatgcttgacaatgagttgcacaatctatttttgcacaactaccaacaattatt |
16154950 |
T |
|
| Q |
435 |
gtgcattcaccttcaacctgtattaattgctctgtgctc |
473 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||| |
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| T |
16154949 |
gtgcattcaccttctacctgtattaattgccctgtgctc |
16154911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 296 - 443
Target Start/End: Complemental strand, 16271248 - 16271101
Alignment:
| Q |
296 |
taatcctggtggtggcttatcaaaagtacaagtgcataagttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatga |
395 |
Q |
| |
|
|||||||||||| | | |||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16271248 |
taatcctggtggagaccgatcaaaagcacaggtgcataagttgtagaatgaacatgaagatcctaaaacagcaacaccttttgcatatgattgacaatga |
16271149 |
T |
|
| Q |
396 |
gttgcacaatcttcttttgcacaactaccaacaatttttgtgcattca |
443 |
Q |
| |
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|||||||||| | |||| |||| ||||| | |||||||||||||||| |
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|
| T |
16271148 |
gttgcacaatttgctttatcacatctacctataatttttgtgcattca |
16271101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 314 - 445
Target Start/End: Complemental strand, 16289334 - 16289203
Alignment:
| Q |
314 |
atcaaaagtacaagtgcataagttgtagtatgaacatgaggatcctaaaacagcaacaccttttgcatatgattgacaatgagttgcacaatcttctttt |
413 |
Q |
| |
|
|||||||| |||| ||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| | || |
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|
| T |
16289334 |
atcaaaagcacaaatgcataagtcgtagaatgaacatgatgatcctaaaacagcaacatcttttgcatatgattgacaatgaactgcacaatttatttca |
16289235 |
T |
|
| Q |
414 |
gcacaactaccaacaatttttgtgcattcacc |
445 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |
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|
| T |
16289234 |
tcacatctacccacaatttttgtgcattcacc |
16289203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 16200301 - 16200245
Alignment:
| Q |
414 |
gcacaactaccaacaatttttgtgcattcaccttcaacctgtattaattgctctgtg |
470 |
Q |
| |
|
|||||||| |||| |||||||||||| | |||||| |||||||| |||||| ||||| |
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|
| T |
16200301 |
gcacaactgccaataatttttgtgcaattaccttctacctgtatcaattgcactgtg |
16200245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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