View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_2 (Length: 626)
Name: NF0875_high_2
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 29 - 613
Target Start/End: Original strand, 46961393 - 46961979
Alignment:
| Q |
29 |
aaggttctggtctgaaaaggcg-gggttcaaatcccacc-taaacttttcttgtttggggcttgtatatgagaaaaacaagttggagtttcccaaaactc |
126 |
Q |
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| T |
46961393 |
aaggttctggtctgaaaaggcgtgggttcaaatcccaccctaaacttttcttgtttggggcttgtatatgagaaaaacaagttggagtttcccaaaactc |
46961492 |
T |
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| Q |
127 |
cactatcgggaaaaaccaaaagctcaccgaaaatgcagttggagttagtcgttggctgccataaatggtgagaaagtccgtctagttacagttccttaat |
226 |
Q |
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| T |
46961493 |
cactaccgggaaaaaccaaaagctcaccgaaaatgcagttggagttagtcgttggctgccataaatggtgagaaagtccgtctagttacagttccttaat |
46961592 |
T |
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| Q |
227 |
gaagagttctgatgaagacaatgacggagtctttggtaatgataaagctaaagaaataacttgattatcatctaaaggtgcaaaatttgttgattaagtg |
326 |
Q |
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| T |
46961593 |
gaagagttctgatgaagacaatgacggagtctttggtaatgataaagctaaagaaataacttgattatcatctaaaggtgcaaaatttgttgattaagtg |
46961692 |
T |
|
| Q |
327 |
cgtaatgatccaaatcaacattggttagatgatttccaaatggataaacatatatgatacaagttatgtggtattttggaaaccaccaaggtttattgcg |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46961693 |
cgtaatgatccaaatcaacattggttagatgatttccaaatggataaacatatatgatacaagttatgtggtattttggaaaccaccaaggtttattgtg |
46961792 |
T |
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| Q |
427 |
tggaaaaaatcgaatcaaaatttagaagcaattagcaatgtttatgttcgttattggacataatctaaggataaggactgttcaagaattatttcatcag |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46961793 |
tggaaaaaatcgaatcaaaatttagaagcaattagcaatgtttatgttcgttattggacataatctaaggataaggactgttcaagaattatttcatcag |
46961892 |
T |
|
| Q |
527 |
tctggtgaaactattagtcatcacacaaacaatgttttgaatgcaataatgtttacttccagggattattttcagcctcctagctct |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46961893 |
tctggtgaaactattagtcatcacacaaacaatgttttgaatgcaataatgtttacttccagggattattttcagcctcctagctct |
46961979 |
T |
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