View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0875_high_27 (Length: 392)
Name: NF0875_high_27
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 70 - 377
Target Start/End: Original strand, 49181809 - 49182115
Alignment:
| Q | 70 | cattcttcactaaacactacattataattagagggctgcaaaagnnnnnnnntggatattatacactaatgnnnnnnnnnnnnnnnnnnnataccatgtt | 169 | Q |
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| T | 49181809 | cattcttcactaaacactacat-ataattagagggctgcaaaagaaaaaaaatggatattatacactaatgtttttcttcttttttcttcataccatgtt | 49181907 | T |
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| Q | 170 | tttaaaaccgaactgaattggatggctcaattgattcaatcaggaattagtcagttcgtccgataattttcttggctaatggttacttagcagtctgtcg | 269 | Q |
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| T | 49181908 | tttaaaactgaactgaactggatggctcaattgattcaatcaggaatcagtcagttcgtccgataattttcttggctaatggttacttagcagtctgtcg | 49182007 | T |
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| Q | 270 | aaccagatggaactgaggttgtattgggtcgagccaagttcaattgcagttgattgagctgagattgaaagtgtcaaaataagattaaataaattaattt | 369 | Q |
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| T | 49182008 | aaccagatgtaactgaggttgtattgggtcgagccaggttcaattgcagttgattgaactgagattgaaagtgtcaaaataagattaaataaattaattt | 49182107 | T |
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| Q | 370 | gtatgtgt | 377 | Q |
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| T | 49182108 | gtatgtgt | 49182115 | T |
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