View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_high_28 (Length: 383)

Name: NF0875_high_28
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_high_28
NF0875_high_28
[»] chr6 (5 HSPs)
chr6 (132-250)||(1859724-1859842)
chr6 (158-202)||(20378932-20378976)
chr6 (135-183)||(22047206-22047254)
chr6 (137-183)||(22046430-22046476)
chr6 (137-183)||(22058838-22058884)
[»] chr1 (6 HSPs)
chr1 (139-226)||(14389733-14389820)
chr1 (141-201)||(15418235-15418295)
chr1 (175-245)||(4930496-4930566)
chr1 (135-176)||(4929810-4929851)
chr1 (139-176)||(10920140-10920177)
chr1 (139-175)||(28762447-28762483)
[»] chr2 (4 HSPs)
chr2 (137-176)||(3322914-3322953)
chr2 (135-183)||(44357593-44357641)
chr2 (137-183)||(44356817-44356863)
chr2 (137-177)||(13913465-13913505)
[»] chr3 (4 HSPs)
chr3 (135-177)||(45059786-45059828)
chr3 (135-177)||(45082206-45082248)
chr3 (137-178)||(45081491-45081532)
chr3 (139-202)||(33565363-33565427)
[»] chr7 (8 HSPs)
chr7 (139-202)||(31076917-31076981)
chr7 (139-179)||(43104697-43104737)
chr7 (137-183)||(41115489-41115535)
chr7 (137-183)||(44545262-44545308)
chr7 (139-176)||(43103836-43103873)
chr7 (135-183)||(18977842-18977890)
chr7 (135-183)||(18978617-18978665)
chr7 (139-202)||(42417441-42417505)
[»] chr5 (3 HSPs)
chr5 (139-179)||(27365637-27365677)
chr5 (162-219)||(12697236-12697293)
chr5 (137-178)||(22778249-22778290)
[»] chr4 (5 HSPs)
chr4 (137-177)||(56295238-56295278)
chr4 (138-176)||(1866245-1866283)
chr4 (135-183)||(50182458-50182505)
chr4 (139-202)||(50186042-50186106)
chr4 (137-177)||(55000629-55000669)
[»] scaffold0085 (1 HSPs)
scaffold0085 (137-178)||(14946-14987)
[»] chr8 (1 HSPs)
chr8 (137-177)||(36228509-36228549)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 1859842 - 1859724
Alignment:
132 gtagacatatcaagtgagatgacattttaaaatgagagatgagaggaataaaaaatgaccattagattaaactctacggtgcagattagaaagtgcacag 231  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
1859842 gtagacatatcaagtgagaggacattttaaaatgagagatgagaggaataaaaaatgaccattagattaaactctacggtgcagattagacagtgcacag 1859743  T
232 atctagaaagagcacatga 250  Q
    |||||||||||||||||||    
1859742 atctagaaagagcacatga 1859724  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 20378976 - 20378932
Alignment:
158 ttaaaatgagagatgagaggaataaaaaatgaccattagattaaa 202  Q
    ||||||||||||||||||||| || | ||||||||||||||||||    
20378976 ttaaaatgagagatgagaggagtacataatgaccattagattaaa 20378932  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 22047254 - 22047206
Alignment:
135 gacatatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||||||| ||  | ||||||||||||||||||||||||||    
22047254 gacatatcaagtgagaggaattgttaaaatgagagatgagaggaataaa 22047206  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 22046430 - 22046476
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||||    
22046430 catatcaagtgagaggagttgttaaaatgagagatgagaggaataaa 22046476  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 22058838 - 22058884
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||||    
22058838 catatcaagtgagaggagttgttaaaatgagagatgagaggaataaa 22058884  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 14389733 - 14389820
Alignment:
139 tatcaagtgagatgacattttaaaatgagagatgagaggaataaaaaatgaccattagattaaactctacggtgcagattagaaagtg 226  Q
    |||||||||||| ||||| |||  ||||||||||||||||||||||| |||||||||||||||  | |||| | || |||||||||||    
14389733 tatcaagtgagaggacatcttattatgagagatgagaggaataaaaattgaccattagattaatgtgtacgatccaaattagaaagtg 14389820  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 15418235 - 15418295
Alignment:
141 tcaagtgagatgacattttaaaatgagagatgagaggaataaaaaatgaccattagattaa 201  Q
    |||| ||||||||| ||||||||||||||||||||||   ||| ||||||||||| |||||    
15418235 tcaaatgagatgactttttaaaatgagagatgagagggtgaaataatgaccattaaattaa 15418295  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 4930566 - 4930496
Alignment:
175 aggaataaaaaatgaccattagattaaactctacggtgcagattagaaagtgcacagatctagaaagagca 245  Q
    |||||||||| | ||||||| ||||||| | |||||||||||||| ||| |||||  || |||||||||||    
4930566 aggaataaaagaagaccattggattaaaatgtacggtgcagattaaaaattgcacgaatttagaaagagca 4930496  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 4929810 - 4929851
Alignment:
135 gacatatcaagtgagatgacattttaaaatgagagatgagag 176  Q
    |||||||||||||||| ||||| ||| |||||||||||||||    
4929810 gacatatcaagtgagaggacatcttataatgagagatgagag 4929851  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 10920177 - 10920140
Alignment:
139 tatcaagtgagatgacattttaaaatgagagatgagag 176  Q
    |||||||||||| ||||||||| |||||||||||||||    
10920177 tatcaagtgagaggacattttataatgagagatgagag 10920140  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 28762447 - 28762483
Alignment:
139 tatcaagtgagatgacattttaaaatgagagatgaga 175  Q
    |||||||||||| ||||||||| ||||||||||||||    
28762447 tatcaagtgagaggacattttagaatgagagatgaga 28762483  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 3322914 - 3322953
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagag 176  Q
    |||||||||||||| |||||||||||||||||||||||||    
3322914 catatcaagtgagaggacattttaaaatgagagatgagag 3322953  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 44357641 - 44357593
Alignment:
135 gacatatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||||||| ||  | ||||||||||||||||||||||||||    
44357641 gacatatcaagtgagaggaattgttaaaatgagagatgagaggaataaa 44357593  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 44356817 - 44356863
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||||    
44356817 catatcaagtgagaggagttgttaaaatgagagatgagaggaataaa 44356863  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 13913505 - 13913465
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagagg 177  Q
    |||||||||||||| ||||| ||| ||||||||||||||||    
13913505 catatcaagtgagaggacatcttataatgagagatgagagg 13913465  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 45059786 - 45059828
Alignment:
135 gacatatcaagtgagatgacattttaaaatgagagatgagagg 177  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
45059786 gacatatcaagtgagaggaccttttaaaatgagagatgagagg 45059828  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 45082248 - 45082206
Alignment:
135 gacatatcaagtgagatgacattttaaaatgagagatgagagg 177  Q
    |||||||||||||||| ||  ||||||||||||||||||||||    
45082248 gacatatcaagtgagaggatcttttaaaatgagagatgagagg 45082206  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 45081491 - 45081532
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagagga 178  Q
    ||||||||||||||  || |||||||||||||||||||||||    
45081491 catatcaagtgagagcaccttttaaaatgagagatgagagga 45081532  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 33565363 - 33565427
Alignment:
139 tatcaagtgagatgacattttaaaatgaga-gatgagaggaataaaaaatgaccattagattaaa 202  Q
    |||||||||||| ||||||||| ||||||| | ||||||||  ||| ||||||| ||||||||||    
33565363 tatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaaa 33565427  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 31076917 - 31076981
Alignment:
139 tatcaagtgagatgacattttaaaatgaga-gatgagaggaataaaaaatgaccattagattaaa 202  Q
    |||||||||||||||||||||| ||||||| | ||||||||  ||| ||||||| ||||||||||    
31076917 tatcaagtgagatgacattttataatgagagggtgagaggataaaataatgacccttagattaaa 31076981  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 43104737 - 43104697
Alignment:
139 tatcaagtgagatgacattttaaaatgagagatgagaggaa 179  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
43104737 tatcaagtgagatgacattttataatgagatatgagaggaa 43104697  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 41115535 - 41115489
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||||    
41115535 catatcaagtgagaggagttgttaaaatgagagatgagaggaataaa 41115489  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 44545308 - 44545262
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||||||||  | |||||||||||||||| |||||||||    
44545308 catatcaagtgagatgagttgttaaaatgagagatgataggaataaa 44545262  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 43103836 - 43103873
Alignment:
139 tatcaagtgagatgacattttaaaatgagagatgagag 176  Q
    |||||||||||| ||||||||| |||||||||||||||    
43103836 tatcaagtgagaggacattttataatgagagatgagag 43103873  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 18977842 - 18977890
Alignment:
135 gacatatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||||    
18977842 gacatatcaagttagaggagttgttaaaatgagagatgagaggaataaa 18977890  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 18978665 - 18978617
Alignment:
135 gacatatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    |||||||||||||||| ||  | ||||||||||||||||||| ||||||    
18978665 gacatatcaagtgagaagagttgttaaaatgagagatgagagaaataaa 18978617  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 42417441 - 42417505
Alignment:
139 tatcaagtgagatgacattttaaaatgaga-gatgagaggaataaaaaatgaccattagattaaa 202  Q
    |||||||||||| ||||||||| ||||||| | ||||||||  ||| ||||||| ||||||||||    
42417441 tatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaaa 42417505  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 27365677 - 27365637
Alignment:
139 tatcaagtgagatgacattttaaaatgagagatgagaggaa 179  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
27365677 tatcaagtgagaggacattttataatgagagatgagaggaa 27365637  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 12697293 - 12697236
Alignment:
162 aatgagagatgagaggaataaaaaatgaccattagattaaactctacggtgcagatta 219  Q
    ||||||||||||||| |||||| ||||||| || ||||||| | ||||||||| ||||    
12697293 aatgagagatgagagaaataaataatgaccctttgattaaattgtacggtgcatatta 12697236  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 22778249 - 22778290
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagagga 178  Q
    |||||||||||||| ||||| ||| |||||||||||||||||    
22778249 catatcaagtgagaggacatcttataatgagagatgagagga 22778290  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 56295238 - 56295278
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagagg 177  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
56295238 catatcaagtgagaggaccttttaaaatgagagatgagagg 56295278  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 1866283 - 1866245
Alignment:
138 atatcaagtgagatgacattttaaaatgagagatgagag 176  Q
    ||||||||||||| ||||||||| |||||||||||||||    
1866283 atatcaagtgagaggacattttataatgagagatgagag 1866245  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 50182458 - 50182505
Alignment:
135 gacatatcaagtgagatgacattttaaaatgagagatgagaggaataaa 183  Q
    ||||||||||||||||  || ||| ||||||||||||||||||||||||    
50182458 gacatatcaagtgagagcac-tttcaaaatgagagatgagaggaataaa 50182505  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 50186106 - 50186042
Alignment:
139 tatcaagtgagatgacattttaaaatgaga-gatgagaggaataaaaaatgaccattagattaaa 202  Q
    |||||||||||| ||||||||| ||||||| | ||||||||  ||| ||||||| ||||||||||    
50186106 tatcaagtgagaggacattttagaatgagagggtgagaggatgaaataatgacccttagattaaa 50186042  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 55000669 - 55000629
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagagg 177  Q
    |||||||||||| | ||| ||||||||||||||||||||||    
55000669 catatcaagtgaaaggaccttttaaaatgagagatgagagg 55000629  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 14987 - 14946
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagagga 178  Q
    ||||||||||||||  || |||||||||||||||||||||||    
14987 catatcaagtgagagcaccttttaaaatgagagatgagagga 14946  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 36228509 - 36228549
Alignment:
137 catatcaagtgagatgacattttaaaatgagagatgagagg 177  Q
    |||||||||| ||| ||| ||||||||||||||||||||||    
36228509 catatcaagtaagaggaccttttaaaatgagagatgagagg 36228549  T

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