View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_36 (Length: 301)
Name: NF0875_high_36
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 47196786 - 47196490
Alignment:
| Q |
1 |
ttactaagtttttgtacgtaataatcaaaattagttcatttccttctctctgtactattttttgtttctgtttatttttcctatatgccaaacttagaga |
100 |
Q |
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| T |
47196786 |
ttactaagtttttgtacgtaataatcaaaattagttcatttccttctctctgtactattttttgtttctgtttatttttcctatatgccaaacttagaga |
47196687 |
T |
|
| Q |
101 |
tcaacacgaactgttatttgatgatggttctactgatgtgctcctataaattataatgtcagggtgaagaatacaaattgttttggccggatcatccaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47196686 |
tcaacacgaactgttatttgatgatggttctactgatgtgctcctataaattataatgtcagggtgaagaatacaaattgttttggccggatcatccaga |
47196587 |
T |
|
| Q |
201 |
atttgtgagaatggcagcacgatttggtgccacgattgttccatttggagctgtaggcgaagatgatatagctgaagtaagtttcttcttttctctc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47196586 |
atttgtgagaatggcagcacgatttggtgccacgattgttccatttggagctgtaggcgaagatgatatagctgaagtaagtttcttcttttctctc |
47196490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 31976087 - 31976195
Alignment:
| Q |
159 |
tcagggtgaagaatacaaattgttttggccggatcatccagaatttgtgagaatggcagcacgatttggtgccacgattgttccatttggagctgtaggc |
258 |
Q |
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||||||||||||||||||||| || ||||| || || | || ||| | |||||||||||| ||||||| |||| || || || ||||| ||||| || |
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| T |
31976087 |
tcagggtgaagaatacaaattattctggcctgaacaatctgagtttatcagaatggcagcaagatttggagccaaaatcgtaccttttggtgctgttgga |
31976186 |
T |
|
| Q |
259 |
gaagatgat |
267 |
Q |
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||||||||| |
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| T |
31976187 |
gaagatgat |
31976195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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