View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_39 (Length: 290)
Name: NF0875_high_39
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 40073408 - 40073674
Alignment:
| Q |
1 |
ctgccaagaataatttgtcttgtttcatgtcaacttatgggtccttgtaaaaacaaggacaaaacctagctacatatgttggtgttcttcacctaaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40073408 |
ctgccaagaataatttgtcttgtttcatgtcaacttatgggt--------aaacaaggacaaaacctagctacatatgttggtgttcttcacctaaaatt |
40073499 |
T |
|
| Q |
101 |
tgtccaaaacgcaattggcatgtccattttaaggattattttcttcagaaaagca--gttatattttgatcattagtaatttttaaggaaaaatagataa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40073500 |
tgtccaaaacgcaattggcatgtccattttaaggattattttcttcagaaaagcatagttatattttgatcattagtaatttttaaagaaaaatagataa |
40073599 |
T |
|
| Q |
199 |
gcaagtcattaagtctcggggcaatgcttcatttgcattattgtgtgccacaccctcaaaaacaaagtattccgt |
273 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40073600 |
gcaagtcattaagtctcgggccaaagcttcatttgcattattgtgtgccacaccctcaaaaacaaagtattccgt |
40073674 |
T |
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