View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_high_48 (Length: 265)

Name: NF0875_high_48
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_high_48
NF0875_high_48
[»] chr6 (2 HSPs)
chr6 (40-256)||(28612050-28612267)
chr6 (54-253)||(11931953-11932152)
[»] chr1 (6 HSPs)
chr1 (54-256)||(49053789-49053992)
chr1 (29-256)||(49061369-49061598)
chr1 (76-253)||(42263370-42263548)
chr1 (139-253)||(50059492-50059606)
chr1 (138-249)||(52282015-52282128)
chr1 (161-253)||(17458409-17458501)
[»] chr3 (6 HSPs)
chr3 (29-256)||(52653769-52653998)
chr3 (29-256)||(33709825-33710055)
chr3 (29-249)||(40574206-40574428)
chr3 (143-195)||(23686089-23686141)
chr3 (143-195)||(24058326-24058378)
chr3 (139-228)||(31362247-31362336)
[»] chr8 (3 HSPs)
chr8 (29-256)||(12729386-12729615)
chr8 (115-195)||(44729133-44729214)
chr8 (29-111)||(28696011-28696094)
[»] chr7 (2 HSPs)
chr7 (35-178)||(12239521-12239667)
chr7 (138-249)||(34091475-34091586)
[»] chr2 (1 HSPs)
chr2 (76-253)||(14218826-14219004)
[»] scaffold0007 (1 HSPs)
scaffold0007 (139-250)||(217750-217861)
[»] chr4 (4 HSPs)
chr4 (101-177)||(48779825-48779902)
chr4 (115-256)||(24391830-24391970)
chr4 (138-253)||(20251408-20251523)
chr4 (54-253)||(47077960-47078154)
[»] chr5 (2 HSPs)
chr5 (54-256)||(29006480-29006683)
chr5 (29-178)||(9851337-9851487)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 40 - 256
Target Start/End: Original strand, 28612050 - 28612267
Alignment:
Q  40 gtgtgtggaacacataacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatgg 138  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||  ||||||||    
T  28612050 gtgtgtggaacacataacctttaggttcgatttttccccaccagttatgtcaacagtatgtaaaatggtatatcggcgaatccccttcagaatacaatgg 28612149  T
Q  139 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  28612150 aatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcactagagataagaa 28612249  T
Q  239 agaatgatttagtataat 256  Q
    ||||||||||||||||||    
T  28612250 agaatgatttagtataat 28612267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 253
Target Start/End: Complemental strand, 11932152 - 11931953
Alignment:
Q  54 taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaaggg-tatatcagcgaatccccttcagg-tacaatggaatccttgacgtg 151  Q
    ||||||||||||| ||||  ||||||| ||||||| ||||   ||| ||||||| |||| ||||||| |||||||||| ||| ||| ||||||||| |||    
T  11932152 taacctttaggtttgattcgcccccactagttatgccaaccggatgcaaaagggttataccagcgaa-ccccttcaggatacgatgaaatccttgatgtg 11932054  T
Q  152 acttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagt 251  Q
    |||||   ||||||||||||  |||||  || ||||||| || | || ||  ||||||||| | | ||||||||||||| | || |||||||||| ||||    
T  11932053 acttgcttattcacaccaagtttatcg-acaatggtagtttatagaataaaattctgtcaaattctctcgtgcactagataaaagaaagaatgatatagt 11931955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 256
Target Start/End: Complemental strand, 49053992 - 49053789
Alignment:
Q  54 taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatccccttcagg-tacaatggaatccttgacgtg 151  Q
    ||||||||||||||||||  ||||||||||||||  ||||   ||| |||||||| ||| | |||||||||||||||| ||||||| |||||||||||||    
T  49053992 taacctttaggttcgattcgcccccaccagttataccaactggatgcaaaagggttataccggcgaatccccttcaggatacaatgaaatccttgacgtg 49053893  T
Q  152 acttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagt 251  Q
    ||||| |||||||||||||||||||||  || ||||||| ||||||| || |||||| ||||| |||||||||||||||||  | |||||||||||||||    
T  49053892 acttgcacattcacaccaagcatatcga-caatggtagtttacaaaataaagttctgccaatttccctcgtgcactagagaagagaaagaatgatttagt 49053794  T
Q  252 ataat 256  Q
    |||||    
T  49053793 ataat 49053789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 49061598 - 49061369
Alignment:
Q  29 aattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatcccctt 126  Q
    |||||||||| |||||||| | ||| ||  ||||||||||||||  ||||||||||||||| |||| | ||| |||||||| ||| |  |||||||||||    
T  49061598 aattctaaagcgtgtgtgggaaacactagtctttaggttcgattcgcccccaccagttatgccaactagatgcaaaagggttataccgacgaatcccctt 49061499  T
Q  127 cagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgca 225  Q
    |||  |||||||||||||||||||||| ||| ||||||||||||| |||||||  || ||||||| |||| || || ||| |||||||| ||||||||||    
T  49061498 cagaatacaatggaatccttgacgtgatttgcacattcacaccaaacatatcga-caatggtagtttacagaataaagttttgtcaatttccctcgtgca 49061400  T
Q  226 ctagagataaaaaagaatgatttagtataat 256  Q
    ||||||| || ||||||||||||||||||||    
T  49061399 ctagagaaaagaaagaatgatttagtataat 49061369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 42263370 - 42263548
Alignment:
Q  76 cccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcat 174  Q
    ||||||| |||||||||||| ||| |||| |||||| | | |||||||||||||| |||  |  |||| ||||| ||||||| ||||||| || |||| |    
T  42263370 cccaccaattatgtcaacaaaatgcaaaatggtataacggtgaatccccttcaggatactttaaaatctttgacatgacttgcacattcatactaagcgt 42263469  T
Q  175 atcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 253  Q
    ||||  || || || | |||||||||| ||| |||| ||| | ||||||||||||||| || |||||||||| ||||||    
T  42263470 atcgaacaatgttaatttacaaaacaaagttttgtcgatttctctcgtgcactagagaaaagaaagaatgatatagtat 42263548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 50059606 - 50059492
Alignment:
Q  139 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 238  Q
    |||||| |||||||||| || ||||||| | | | ||||| ||| || |||| || | || || ||||||| |||| | ||||||||||||||| || ||    
T  50059606 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 50059507  T
Q  239 agaatgatttagtat 253  Q
    ||||||||| |||||    
T  50059506 agaatgattcagtat 50059492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 52282015 - 52282128
Alignment:
Q  138 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaatt--cccctcgtgcactagagataa 235  Q
    ||||| ||||| ||||||| | |||||||||||||  |||| ||| ||||||| |||| || || ||| ||||||||   | ||| ||||||||||| ||    
T  52282015 gaatctttgacatgacttgcatattcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaa 52282114  T
Q  236 aaaagaatgattta 249  Q
     |||||||||||||    
T  52282115 gaaagaatgattta 52282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 17458501 - 17458409
Alignment:
Q  161 ttcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 253  Q
    |||| ||||||| ||||| ||| || |||| ||||||| || ||| | || ||||  ||||||||||||||| |  |||||||||||||||||    
T  17458501 ttcaaaccaagcgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtat 17458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 52653998 - 52653769
Alignment:
Q  29 aattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatcccctt 126  Q
    ||||| |||| |||||||| ||||| |||||||||||||| |||  ||| ||||||||||| ||||   ||| |||| ||| ||| | ||||||||||||    
T  52653998 aattccaaagcgtgtgtgggacacactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaaaatggttataccggcgaatcccctt 52653899  T
Q  127 cagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgca 225  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||||  |||||  || ||||||| |||| || || ||||||||||||  |||||||||    
T  52653898 caggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcga-caatggtagtttacagaataaagttctgtcaattttcctcgtgca 52653800  T
Q  226 ctagagataaaaaagaatgatttagtataat 256  Q
    ||||||| ||  |||||||||||||||||||    
T  52653799 ctagagaaaagtaagaatgatttagtataat 52653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 33710055 - 33709825
Alignment:
Q  29 aattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatat--cagcgaatcccct 125  Q
    ||||| |||| |||||||| ||||| ||||||||||| ||||||  || |||||||||||||||||   ||| ||||||||||||  | || ||||||||    
T  33710055 aattccaaagcgtgtgtgggacacactaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaaaagggtatataccggctaatcccct 33709956  T
Q  126 tcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgc 224  Q
    | ||| ||| || ||||||||||||||||||| ||||||||||||||| |||||  || ||||||| |||| || || |||||||||| | | || ||||    
T  33709955 ttaggatacgatagaatccttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttacagaataaagttctgtcaaattctctggtgc 33709857  T
Q  225 actagagataaaaaagaatgatttagtataat 256  Q
    |||||||| || ||||||||||||||||||||    
T  33709856 actagagaaaagaaagaatgatttagtataat 33709825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 40574206 - 40574428
Alignment:
Q  29 aattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttc 127  Q
    |||||| |||||| ||||| ||||| ||||||||| | | ||||  ||||||||||| |||| ||    ||| |||| || ||||||||||||  |||||    
T  40574206 aattctgaagtgtatgtgggacacactaacctttaagcttgattcacccccaccagtaatgttaattggatgcaaaatggcatatcagcgaattaccttc 40574305  T
Q  128 agg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcac 226  Q
    ||| ||| |||||||| ||||||||||||| |||||||||| |||| ||||  ||| || |||| |||| || || |||||||||||| | |||||||||    
T  40574306 aggatactatggaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcac 40574405  T
Q  227 tagagataaaaaagaatgattta 249  Q
    |||||| || |||||||||||||    
T  40574406 tagagaaaagaaagaatgattta 40574428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 23686141 - 23686089
Alignment:
Q  143 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 195  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  23686141 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 23686089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 24058378 - 24058326
Alignment:
Q  143 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 195  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  24058378 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 24058326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 31362247 - 31362336
Alignment:
Q  139 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcacta 228  Q
    |||||||||||  |||| |||||||||||||| | ||||| ||  | ||||| ||||||| || ||||||||||||  ||||||||||||    
T  31362247 aatccttgacggaacttatacattcacaccaaacgtatcgatcgatagtagtttacaaaataaagttctgtcaattttcctcgtgcacta 31362336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 12729615 - 12729386
Alignment:
Q  29 aattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatcccctt 126  Q
    ||||| |||| |||||||| ||||| |||||||||||| |||||  || |||||||||||| ||||   ||| |||||||| ||| | |||| |||||||    
T  12729615 aattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggatgcaaaagggttataccggcgattcccctt 12729516  T
Q  127 cagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgca 225  Q
    |||| ||| ||| |||||||||| ||||||| |||||||||||||||||||||  || | ||||| |||  || || |||||||||||| | ||||||||    
T  12729515 caggatacgatgaaatccttgacatgacttgcacattcacaccaagcatatcg-acaattgtagtttactgaataaagttctgtcaatttctctcgtgca 12729417  T
Q  226 ctagagataaaaaagaatgatttagtataat 256  Q
    ||||||| || ||||||| ||||||||||||    
T  12729416 ctagagaaaagaaagaattatttagtataat 12729386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 44729214 - 44729133
Alignment:
Q  115 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 195  Q
    |||||||||||| ||| |||| ||||||||||||||||||||| ||||||| ||||||| ||||| ||| || |||| ||||    
T  44729214 gcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttaca 44729133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 28696011 - 28696094
Alignment:
Q  29 aattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtata 111  Q
    ||||| |||| |||||||| ||||| |||| |||||||| ||||  ||| |||||||||||||||| | ||| |||||||||||    
T  28696011 aattccaaagcgtgtgtgggacacactaacttttaggtttgattcgccctcaccagttatgtcaaccagatgcaaaagggtata 28696094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 12239521 - 12239667
Alignment:
Q  35 aaagtgtgtgtggaacacat-aacctttaggttcgattttcccccaccagttatgtcaa-caatatgtaaaagggtatatcagcgaatccccttcagg-t 131  Q
    |||| |||||||| |||||| |||||||||||||||||  ||||||||||||||||||| |   ||| |||||||||| || |||||||||||||||| |    
T  12239521 aaagcgtgtgtgggacacattaacctttaggttcgattcgcccccaccagttatgtcaaaccggatgcaaaagggtatgtcggcgaatccccttcaggat 12239620  T
Q  132 acaatggaatccttgacgtgacttgtacattcacaccaagcatatcg 178  Q
    || ||| |||||||||||||||||| ||||||||||||||| |||||    
T  12239621 acgatgaaatccttgacgtgacttgcacattcacaccaagcgtatcg 12239667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 34091475 - 34091586
Alignment:
Q  138 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaa 237  Q
    ||||||||||||||||||| ||||||||||||| | |||   | | ||||||| ||||||  || ||||| |||||| | ||| |||| |||||| || |    
T  34091475 gaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggtagtttacaaagtaaagttctctcaatttctctcatgcattagagaaaaga 34091574  T
Q  238 aagaatgattta 249  Q
    | ||||||||||    
T  34091575 atgaatgattta 34091586  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 14218826 - 14219004
Alignment:
Q  76 cccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcat 174  Q
    ||||||||||||||||||   ||| ||||| ||||||||  ||||| |||||| | ||| || |||||  |||| |||| |||||||||||||||| | |    
T  14218826 cccaccagttatgtcaactggatgcaaaagagtatatcaatgaatctccttcaagatactatagaatcactgacttgacatgtacattcacaccaaacgt 14218925  T
Q  175 atcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 253  Q
    |||  ||| || |||| ||||||| || ||||| ||||||  |||||||||||||||| || |||||||||||||||||    
T  14218926 atccatcaatgatagtttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtat 14219004  T

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Target: scaffold0007 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 217861 - 217750
Alignment:
Q  139 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 238  Q
    ||||||||| | |||||| ||||||||||||||  ||||| ||| ||||||| ||||||| ||||||||| ||||| | |||||| |||||||| || ||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaa 217762  T
Q  239 agaatgatttag 250  Q
    ||||| ||||||    
T  217761 agaattatttag 217750  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 48779825 - 48779902
Alignment:
Q  101 aaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatc 177  Q
    ||||||||||||| | |||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||||||||||    
T  48779825 aaaagggtatatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatc 48779902  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 24391970 - 24391830
Alignment:
Q  115 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 213  Q
    |||||||||||||| | ||||||||||||||||  |||||||| |||| |||||||| | |||||  || || |||| |||| || || ||| |||||||    
T  24391970 gcgaatccccttcaagatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaat 24391873  T
Q  214 tcccctcgtgcactagagataaaaaagaatgatttagtataat 256  Q
    | | ||| ||||||||||| || ||||||||||||||||||||    
T  24391872 ttctctcatgcactagagaaaagaaagaatgatttagtataat 24391830  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 253
Target Start/End: Complemental strand, 20251523 - 20251408
Alignment:
Q  138 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaa 237  Q
    ||||| |||| ||| |||||||||||||| ||||  ||||| ||| || |||| |||| || || |||||||||||| | ||||||||||| ||| || |    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgtgcactacagaaaaga 20251424  T
Q  238 aagaatgatttagtat 253  Q
    || |||||||||||||    
T  20251423 aataatgatttagtat 20251408  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 253
Target Start/End: Original strand, 47077960 - 47078154
Alignment:
Q  54 taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtga 152  Q
    |||||||||| ||| ||| | |||||||| |||||||||    ||| |||||||||| | | | ||||||||| ||| ||| ||||||||||||||||||    
T  47077960 taacctttagattctattcttccccaccaattatgtcaatcggatgcaaaagggtatttga-caaatcccctttaggataccatggaatccttgacgtga 47078058  T
Q  153 cttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagta 252  Q
    |||  ||||| ||||||     | || ||| || |||| |||| || || |||||||||||| | ||||| ||||| | | || ||||||||||||||||    
T  47078059 cttacacatttacacca-----aacgatcaatgttagtttacagaataaagttctgtcaatttctctcgtacactacaaaaaagaaagaatgatttagta 47078153  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 256
Target Start/End: Complemental strand, 29006683 - 29006480
Alignment:
Q  54 taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatccccttcagg-tacaatggaatccttgacgtg 151  Q
    |||| |||||||||||||  |||| || |||| | ||||| | ||| |||||||| ||||  |||||||| ||||||  |||||||||||||||||| ||    
T  29006683 taacttttaggttcgattcgcccc-actagttttatcaaccagatgcaaaagggttatattggcgaatcctcttcagaatacaatggaatccttgacatg 29006585  T
Q  152 acttgtacattcacaccaagcatatcgttcattggtag-tgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttag 250  Q
    || |  ||||||||||||||| ||||| ||| || ||| | |||| || || |||||||||| |   ||||||||||||| | || || |||||||||||    
T  29006584 acatacacattcacaccaagcgtatcg-tcaatgttagttttacagaataaagttctgtcaacttatctcgtgcactagaaaaaagaatgaatgatttag 29006486  T
Q  251 tataat 256  Q
    ||||||    
T  29006485 tataat 29006480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 9851337 - 9851487
Alignment:
Q  29 aattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttc 127  Q
    ||||| |||| |||||||| ||||| |||| ||||||||| ||| ||||  |||||||| | ||||   ||| ||||||||||| | |||||||||||||    
T  9851337 aattccaaagcgtgtgtgggacacactaacatttaggttcaattctccct-accagttaagccaaccgaatgcaaaagggtataccggcgaatccccttc 9851435  T
Q  128 -aggtacaatggaatccttgacgtgacttgtacattcacaccaagcatatcg 178  Q
     || ||| ||||||| ||| | |||| ||| ||||||||||||||| |||||    
T  9851436 aagatacgatggaatacttaatgtgatttgcacattcacaccaagcgtatcg 9851487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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