View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_high_49 (Length: 262)
Name: NF0875_high_49
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 247
Target Start/End: Complemental strand, 2857225 - 2857047
Alignment:
| Q |
66 |
tttcgcaagagacatggatctggtcctttcactcatggcaaaccagnnnnnnnnnnnnngctagatagagagagtatcattagaggcatataaatannnn |
165 |
Q |
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| T |
2857225 |
tttcgcaagagacatggatctgttcctttcactcatggcaaaccagttttttttttt--gctagatagagagagtatcattagaggcatataaatatttt |
2857128 |
T |
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| Q |
166 |
nnnnnnnnnctttgtcaaccttaaagttgtgattcttcttaaattcttagatattcataaatgatacgatcgtatgcacact |
247 |
Q |
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| T |
2857127 |
ttcatttttctttgtctgccttaaagttgtgattcttcttaaattcttagatattcataaatgata-gatcgtatgcacact |
2857047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 2857313 - 2857283
Alignment:
| Q |
37 |
caagtatcataaaaatattgtttaagaaatt |
67 |
Q |
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| T |
2857313 |
caagtatcataaaaatattgtttaagaaatt |
2857283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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