View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_10 (Length: 532)

Name: NF0875_low_10
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_10
NF0875_low_10
[»] chr3 (3 HSPs)
chr3 (128-316)||(2194318-2194506)
chr3 (30-82)||(2194544-2194596)
chr3 (238-283)||(28673948-28673993)
[»] chr2 (4 HSPs)
chr2 (233-290)||(29197397-29197454)
chr2 (235-290)||(19016031-19016086)
chr2 (236-288)||(37755994-37756046)
chr2 (234-290)||(39714991-39715047)
[»] chr8 (1 HSPs)
chr8 (234-290)||(28783059-28783115)
[»] chr4 (1 HSPs)
chr4 (238-286)||(3350480-3350528)
[»] chr7 (2 HSPs)
chr7 (235-290)||(23301623-23301678)
chr7 (234-290)||(2446307-2446363)
[»] chr5 (1 HSPs)
chr5 (234-290)||(30109329-30109385)
[»] chr1 (2 HSPs)
chr1 (234-290)||(40257398-40257454)
chr1 (234-290)||(51814493-51814549)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 128 - 316
Target Start/End: Complemental strand, 2194506 - 2194318
Alignment:
Q  128 gtaattgttatgggacattttattcttttatttttatgaatttggatcctctcaattggtaaaataatttgagagatgaccccactattagaatatgcga 227  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  2194506 gtaattgttatgagacatttcatttttttatttttatgaatttggatcttctcaattgataaaataatttgagagatgaccccactattagaatatgcgg 2194407  T
Q  228 atgatcaaacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctccggtgccaatttggatgagctaattta 316  Q
    |||||||||||||||||||||||  |||| | ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  2194406 atgatcaaacccacttgagttggtctgatagcaatgacttgagacttaggaatgtgctcctccgatgccaatttagatgagctaattta 2194318  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 2194596 - 2194544
Alignment:
Q  30 gttggctgtcttgttcttgagtaagacaaaaaagttatgtcgataacatgaaa 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2194596 gttggctgtcttgttcttgagtaagacaaaaaagttatgtcgataacatgaaa 2194544  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 28673948 - 28673993
Alignment:
Q  238 ccacttgagttggcttgatggtaatgacttgagacttgggaatgtg 283  Q
    ||||||| ||||||||||||||| |||||||||| | |||||||||    
T  28673948 ccacttgggttggcttgatggtattgacttgagattggggaatgtg 28673993  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 29197454 - 29197397
Alignment:
Q  233 caaacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    |||||||||||| ||||||||| ||||| ||||||| ||||||||| |||||||||||    
T  29197454 caaacccacttgggttggcttggtggtattgacttgggacttgggagtgtgctcctcc 29197397  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 19016031 - 19016086
Alignment:
Q  235 aacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    |||||||||| |||||  |||||||| || |||||||||||||| |||||||||||    
T  19016031 aacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcc 19016086  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 37756046 - 37755994
Alignment:
Q  236 acccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcct 288  Q
    ||||||||| ||||||||| ||||| || |||| ||| |||||||||||||||    
T  37756046 acccacttgggttggcttggtggtattggcttgggacctgggaatgtgctcct 37755994  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 39714991 - 39715047
Alignment:
Q  234 aaacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    ||||||||||| |||||| || ||||| ||||||| ||| ||||| |||||||||||    
T  39714991 aaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcc 39715047  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 28783059 - 28783115
Alignment:
Q  234 aaacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    ||||||||||| ||||||||| ||||| || |||||||| ||||| |||||||||||    
T  28783059 aaacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcc 28783115  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 3350528 - 3350480
Alignment:
Q  238 ccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctc 286  Q
    |||||||||||||  |||||||| |||||||||| ||||||||||||||    
T  3350528 ccacttgagttggtctgatggtattgacttgagatttgggaatgtgctc 3350480  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 23301678 - 23301623
Alignment:
Q  235 aacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    |||||||||| |||||| || ||||| ||||||| ||||||||| |||||||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctcc 23301623  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 2446307 - 2446363
Alignment:
Q  234 aaacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    ||||||||||| |||||  |||||||| || |||| ||||||||| |||||||||||    
T  2446307 aaacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcc 2446363  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 30109385 - 30109329
Alignment:
Q  234 aaacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    ||||||||||| ||||||||| ||||| || |||| ||| ||||| |||||||||||    
T  30109385 aaacccacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctcc 30109329  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 40257398 - 40257454
Alignment:
Q  234 aaacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    ||||||||||| |||||| || ||||| || |||||||| ||||| |||||||||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcc 40257454  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 51814493 - 51814549
Alignment:
Q  234 aaacccacttgagttggcttgatggtaatgacttgagacttgggaatgtgctcctcc 290  Q
    ||||||||||| |||||| |||||||| ||||||||||  || || |||||||||||    
T  51814493 aaacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcc 51814549  T

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