View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0875_low_16 (Length: 504)
Name: NF0875_low_16
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_16 |
 | |
|
| [»] scaffold0065 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 103 - 447
Target Start/End: Complemental strand, 2711882 - 2711538
Alignment:
| Q |
103 |
tttgctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacac |
202 |
Q |
| |
|
|||||| || ||||| | |||| |||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||| || |||||||| |
|
|
| T |
2711882 |
tttgctaaatattttctgttcgcaggttggcttctgcggcctttcgtgaacttggacggatttatggtgttatggatgaattggaaatactcaagaacac |
2711783 |
T |
|
| Q |
203 |
agttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttctt |
302 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2711782 |
agttgaatccatcaaagctgtcctccttgatgctgaagacaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagatgtgcttctt |
2711683 |
T |
|
| Q |
303 |
cctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttct |
402 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
2711682 |
cctgctgatgatttgatagatgagtttcttattgaagatatgatacataaaagggataaagctcataacaacaaagtgactcaggtatttcattccttat |
2711583 |
T |
|
| Q |
403 |
ctctaagcagagctgcttttcgccataaaatggctcatgagattg |
447 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2711582 |
ccataagcagagctgcttttcgccgtaaaatggctcatgagattg |
2711538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 107 - 447
Target Start/End: Original strand, 2988861 - 2989201
Alignment:
| Q |
107 |
ctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagtt |
206 |
Q |
| |
|
||||| ||||| | ||| |||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||| ||||| |||||| || |
|
|
| T |
2988861 |
ctgaatattttctcttcataggttggcttctgcagcctttcgtgaatttggacgaatttatggtgtcatggatgaattagaaagacttaaaaacacaatt |
2988960 |
T |
|
| Q |
207 |
gaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttcttcctg |
306 |
Q |
| |
|
||| ||||| |||||| |||||| ||||||| |||||||||||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
2988961 |
gaagtcatcagagctgtactccttgatgctgaggagaaacaagagaaaagtcctgctgtacaagtctgggtaagaaggctcaaagacgtgcttcttcctg |
2989060 |
T |
|
| Q |
307 |
ctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttctctct |
406 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
2989061 |
cagatgatttgatagatgagtttcttattgaagatatgatacacaaacgggataaagctcataagaacaaagtgacacaggtaattcattccttcttacc |
2989160 |
T |
|
| Q |
407 |
aagcagagctgcttttcgccataaaatggctcatgagattg |
447 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
2989161 |
aagcagaactgcttttcgccgtaaaatggctcatgagattg |
2989201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 3001798 - 3002022
Alignment:
| Q |
30 |
ttattatcatgattcatacat--gagttttcttaaaatttgtacaagggatgtcaaaatgaaaacagtgattttatttgctgaaaattttgttttcgtag |
127 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3001798 |
ttattatcatgattcatacatatgagttttcttaaaatttgtacaagggatgtcaaaatgaaaacagtgattttatttgctgaaaattttgttttcgtag |
3001897 |
T |
|
| Q |
128 |
gttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctc |
227 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3001898 |
gttggcttctgcagcctttgatgaatttggaaggattaatggtgttatggatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctc |
3001997 |
T |
|
| Q |
228 |
ctttatgctgaagagaaacaagagc |
252 |
Q |
| |
|
||| |||||||||| |||||||||| |
|
|
| T |
3001998 |
cttgatgctgaagacaaacaagagc |
3002022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 284 - 492
Target Start/End: Original strand, 3002021 - 3002229
Alignment:
| Q |
284 |
gctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgaca |
383 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3002021 |
gctcaaagacgtgcttcttcctgctgttgatttgatagatgagtttcttattgaagatatgatacacaaaagggataaagctgataagaacaaagtgaca |
3002120 |
T |
|
| Q |
384 |
caggtatttcattccttctctctaagcagagctgcttttcgccataaaatggctcatgagattgnnnnnnnnnnnnnnngttttaatgatgttgtgaaag |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3002121 |
caggtatttcattccttctctctaagcagagctgctttttgccataaaatggctcttgagattgaaaaaatacaaaaaagttttaatgatgttgtgaaag |
3002220 |
T |
|
| Q |
484 |
atatgtctg |
492 |
Q |
| |
|
||||||||| |
|
|
| T |
3002221 |
atatgtctg |
3002229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 105 - 443
Target Start/End: Complemental strand, 3142763 - 3142422
Alignment:
| Q |
105 |
tgctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacag |
204 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
3142763 |
tgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacag |
3142664 |
T |
|
| Q |
205 |
ttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaa---gacgtgcttct |
301 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||| | ||||| |||||| || || |||| |
|
|
| T |
3142663 |
ttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttca |
3142564 |
T |
|
| Q |
302 |
tcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttc |
401 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||| ||||| |||| ||| ||| | ||| ||||| |||||||||||| |||||||| ||||||| || |
|
|
| T |
3142563 |
tcctgctgatgacttgctagatgaatttgctatcgaagacatgagacaaaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattcttta |
3142464 |
T |
|
| Q |
402 |
tctctaagcagagctgcttttcgccataaaatggctcatgag |
443 |
Q |
| |
|
|||| | ||| ||||||| ||| |||||||||| ||||| |
|
|
| T |
3142463 |
tctccgaatagaattgcttttagccgtaaaatggcttatgag |
3142422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 135 - 447
Target Start/End: Complemental strand, 9851667 - 9851352
Alignment:
| Q |
135 |
tctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatg |
234 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||| |||||||| || | || |||||||||| ||| |
|
|
| T |
9851667 |
tctgctgccttgcgtgaatttggacggatcaatggtgttatgaatgaattggaaaagcttaagaacacggttgaatctattagagttgtgctccttgatg |
9851568 |
T |
|
| Q |
235 |
ctgaagagaaacaaga---gcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttct |
331 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| | ||| ||||| |||||||||||||| ||||||| |||||| ||||||||| ||||||||||| | |
|
|
| T |
9851567 |
ctgaagagaaacaagaagcacaaaatcatgctgttcgaaattgggtaagaaggctcaaagatgtgcttcatcctgcagatgatttgctagatgaatttgt |
9851468 |
T |
|
| Q |
332 |
tattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttctctctaagcagagctgcttttcgccataaa |
431 |
Q |
| |
|
|||||||||||||| |||||| ||| || || ||||||||||||| ||| ||||| |||||||||| |||| || || | | ||||||||| |||| |
|
|
| T |
9851467 |
tattgaagatatgaggaacaaaatggatgaaactcataagaacaaagtaacaaaggtacttcattccttatctccaaacaaaatttcttttcgccgtaaa |
9851368 |
T |
|
| Q |
432 |
atggctcatgagattg |
447 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
9851367 |
atggcatatgagattg |
9851352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 129 - 339
Target Start/End: Complemental strand, 2916701 - 2916491
Alignment:
| Q |
129 |
ttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcc |
228 |
Q |
| |
|
|||||||||| |||| |||||||||| ||||||| ||||||| | | |||| | || |||||| | | || ||||||||||||||||||||||||| |
|
|
| T |
2916701 |
ttggcttctgaggcctgtcgtgaatttcgacggatatatggtgttaagtatgaggtcgataggcttcgggagacggttgaatccatcaaagctgtgctcc |
2916602 |
T |
|
| Q |
229 |
tttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatt |
328 |
Q |
| |
|
|| ||||||| ||||||||||| |||| |||||||||||||||||| ||||||| ||||| || ||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
2916601 |
ttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgcttcatcctgctgatgacttgctagatgaatt |
2916502 |
T |
|
| Q |
329 |
tcttattgaag |
339 |
Q |
| |
|
| ||||||||| |
|
|
| T |
2916501 |
tgttattgaag |
2916491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 2979945 - 2980111
Alignment:
| Q |
103 |
tttgctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacac |
202 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
2979945 |
tttgctgaatattttctttacgtaggttggcttctgttgccttacgcgaatttggacggattaataatgtgatggatgaattagaaagacttaaaaacac |
2980044 |
T |
|
| Q |
203 |
agttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaa |
269 |
Q |
| |
|
| ||||| ||||| |||||| |||||| ||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
2980045 |
aattgaagtcatcagagctgtactccttgatgctgaggagaaacaagagaaaagtcatgctgtacaa |
2980111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 126 - 353
Target Start/End: Complemental strand, 2911704 - 2911477
Alignment:
| Q |
126 |
aggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgc |
225 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||| | || ||||||| ||| |||| ||||||||||||||||| |||||||| || |||| | ||| | |
|
|
| T |
2911704 |
aggttggcatctgcggcctttcgtgagtttggaggaatctatggtgttatgaatgagttggaaaggcttaagaatacagttgagtctatcagaaatgtac |
2911605 |
T |
|
| Q |
226 |
tcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatga |
325 |
Q |
| |
|
||||| ||||||| || |||||||| |||| ||||||||| |||||||| ||||||| |||||||| ||||| | |||||| | ||| ||||||| |
|
|
| T |
2911604 |
tccttgatgctgaggacaaacaagaacaaaaccatgctgtaaaaaactggattagaagactcaaagatgtgctgaattttgctgacaacttgctagatga |
2911505 |
T |
|
| Q |
326 |
atttcttattgaagatatgatacacaaa |
353 |
Q |
| |
|
|||| ||||||||||| ||| ||||||| |
|
|
| T |
2911504 |
atttgttattgaagatttgagacacaaa |
2911477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 125 - 345
Target Start/End: Original strand, 13790825 - 13791045
Alignment:
| Q |
125 |
taggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtg |
224 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||| || |||||| |||||||| |||||||| ||||||||| | ||||||| | | | || |||| |
|
|
| T |
13790825 |
taggttgacttcggcagcctttcgtgaacttggacaagtttttggtgttatggatgagttggaaagacttaagaactctgttgaatgcgtaagagttgtg |
13790924 |
T |
|
| Q |
225 |
ctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatg |
324 |
Q |
| |
|
|||||| | || | || ||||| || |||| | || |||||| || ||| | |||||||||| ||| ||||||| || ||| ||||| ||| |||||| |
|
|
| T |
13790925 |
ctccttgacgcccaggataaacaggaacaaaattttgttgtacagaattggataagaaggctcacagatgtgcttcatcttgcagatgacttgctagatg |
13791024 |
T |
|
| Q |
325 |
aatttcttattgaagatatga |
345 |
Q |
| |
|
||||| ||||||||| ||||| |
|
|
| T |
13791025 |
aatttattattgaaggtatga |
13791045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 3283057 - 3282983
Alignment:
| Q |
125 |
taggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| |||||| |||||||| || ||||| |||||||| |
|
|
| T |
3283057 |
taggttggcttctgcagcctttcgtgaacatggacgaatttttggtgttatggatgagttagaaagacttaagaa |
3282983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 3282917 - 3282852
Alignment:
| Q |
280 |
gaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatga |
345 |
Q |
| |
|
||||||||||||| ||||||| || ||| ||||| ||| |||||||||| ||||||||| ||||| |
|
|
| T |
3282917 |
gaaggctcaaagatgtgcttcatcttgcagatgacttgctagatgaattcattattgaaggtatga |
3282852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 2711519 - 2711491
Alignment:
| Q |
466 |
ttaatgatgttgtgaaagatatgtctgtg |
494 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2711519 |
ttaatgatgttgtgaaagatatgtctgtg |
2711491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 107 - 447
Target Start/End: Original strand, 18355258 - 18355598
Alignment:
| Q |
107 |
ctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagtt |
206 |
Q |
| |
|
||||| ||||| | ||| |||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||| |||||||||||||||| |||||| |
|
|
| T |
18355258 |
ctgaatattttctcttcataggttggcttctgcagcctttcgtgaaattggacgaatttatggtgtcatggatgaactggaaaggcttaagaagacagtt |
18355357 |
T |
|
| Q |
207 |
gaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttcttcctg |
306 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
18355358 |
gaatccatcaaagctgtgctccttgatgctgaagacaaacaagagcaaagtcatgctgtacaactctgggttagaaggctcaacgacctgcttcttcctg |
18355457 |
T |
|
| Q |
307 |
ctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttctctct |
406 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
18355458 |
cagatgatttgatagatgaattttttattgaagatatgatacacaaaagggataaagctcataagaacaaagtgaaacaggtatttcattccttctcacc |
18355557 |
T |
|
| Q |
407 |
aagcagagctgcttttcgccataaaatggctcatgagattg |
447 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
18355558 |
aagcagaactgcttttcgccgtaaaatggctcatgagattg |
18355598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 103 - 447
Target Start/End: Complemental strand, 10756256 - 10755912
Alignment:
| Q |
103 |
tttgctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacac |
202 |
Q |
| |
|
|||||||| | |||| ||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||||| |||| ||| || |
|
|
| T |
10756256 |
tttgctgacatttttcttttcataggttggcttctgttgccttacgtgaatttggacggattaataatgtgaaagatgaattagaaagccttacgaagac |
10756157 |
T |
|
| Q |
203 |
agttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttctt |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| | ||||||||| |||||| | ||||||||||||||||| |||||||||||| |||||| || |
|
|
| T |
10756156 |
agttgaatccatcagagctgtgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatgtgcttgtt |
10756057 |
T |
|
| Q |
303 |
cctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttct |
402 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||||| ||| ||||| ||||||| |||| |
|
|
| T |
10756056 |
gctgcagatgatttgatagatgaatttcttattgaagatatgatacgcaaaagggatgaagctcataagaacaaagtaacaaaggtacttcattctttct |
10755957 |
T |
|
| Q |
403 |
ctctaagcagagctgcttttcgccataaaatggctcatgagattg |
447 |
Q |
| |
|
|| |||||| ||||| |||| | | ||||||||||| ||||||| |
|
|
| T |
10755956 |
ctttaagcaaagctgttttttgtcgtaaaatggctctagagattg |
10755912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 126 - 447
Target Start/End: Complemental strand, 3919728 - 3919404
Alignment:
| Q |
126 |
aggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgc |
225 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||||||| ||| || | |||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
3919728 |
aggttggcttctgcagcgtttcgtgaatttgggcggatttatggtgttatgcatcagttggaaaggcttaagagtacagttcaatccatcagagctgtgc |
3919629 |
T |
|
| Q |
226 |
tcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaa---gacgtgcttcttcctgctgatgatttgataga |
322 |
Q |
| |
|
||||| |||| || ||||||||| | |||| ||||| ||| ||||||||| | |||||||||||| || ||||||| |||||||||||| ||| | || |
|
|
| T |
3919628 |
tccttgatgccgaggagaaacaacaacaaaatcatggtgtgcaaaactggataagaaggctcaaagatgatgtgcttcatcctgctgatgacttgctcga |
3919529 |
T |
|
| Q |
323 |
tgaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttctctctaagcagagctgctttt |
422 |
Q |
| |
|
||||||| ||||| | ||||||| |||||||| || ||||||||||||||||||| ||| ||||| |||||||||| |||| || |||| ||||||| |
|
|
| T |
3919528 |
tgaatttgttattcacgatatgagacacaaaattgaggaagctgataagaacaaagtaacaaaggtacttcattccttatctccaaacagatttgctttt |
3919429 |
T |
|
| Q |
423 |
cgccataaaatggctcatgagattg |
447 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
3919428 |
cgccgtaaaatggctcatgagattg |
3919404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 105 - 447
Target Start/End: Original strand, 44973 - 45317
Alignment:
| Q |
105 |
tgctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacag |
204 |
Q |
| |
|
||||||| ||||| |||| | ||||||||||||||||| |||| ||| |||||||||||| ||||||| ||| |||| ||||||||||||||||| || | |
|
|
| T |
44973 |
tgctgaatattttctttt-gcaggttggcttctgcagcttttcatgagtttggacggattcatggtgttatgcatgagttggaaaggcttaagaatactg |
45071 |
T |
|
| Q |
205 |
ttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaa---gacgtgcttct |
301 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||| ||||||||| | |||||||||| ||| ||||||||| | ||||| |||||| || ||||||| |
|
|
| T |
45072 |
ttgaatccgtcagagctgtgctccttgatgctgaggagaaacaacaacaaagtcatggtgtgcaaaactggataagaagactcaaagatgatgtgcttca |
45171 |
T |
|
| Q |
302 |
tcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttc |
401 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |||| ||||||| | ||| ||||| ||||||||||||||||||||| ||||| ||| |
|
|
| T |
45172 |
tcctgctgatgatttgctagatgaattttctattgaagacatgagacacaaacgggatgaagctcgcaagaacaaagtgacacaggtacttcatcgctta |
45271 |
T |
|
| Q |
402 |
tctctaagcagagctgcttttcgccataaaatggctcatgagattg |
447 |
Q |
| |
|
|||| || ||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
45272 |
tctccaaatagaattgcttttagccgtaaaatggctcatgagattg |
45317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 127 - 447
Target Start/End: Original strand, 50163 - 50486
Alignment:
| Q |
127 |
ggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgct |
226 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| ||||||| ||| | | ||| ||||||||||||| || ||||||||| || ||||||||| |
|
|
| T |
50163 |
ggttggcttctgctgcttttcgtgaatttggacggattcatggtgttatgcacaagttgaaaaggcttaagaatactgttgaatccgtctgagctgtgct |
50262 |
T |
|
| Q |
227 |
cctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaa---gacgtgcttcttcctgctgatgatttgatagat |
323 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||| |||| | ||||| |||||| || || |||| |||||||||||| ||| ||||| |
|
|
| T |
50263 |
cctcgatgctgaagagaaacaagagcaaagtaatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgatgacttgctagat |
50362 |
T |
|
| Q |
324 |
gaatttcttattgaagatatgatacacaaaagagataaagctgataagaacaaagtgacacaggtatttcattccttctctctaagcagagctgcttttc |
423 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||| ||||| |||||| ||| ||| ||||||| ||||||| || |||| || |||| |||||||| |
|
|
| T |
50363 |
aaatttcttattgaagatttgagacacaaacgagatgaagctcgtaagaaaaaactgagacaggtacttcattctttatctccaaacagaattgcttttc |
50462 |
T |
|
| Q |
424 |
gccataaaatggctcatgagattg |
447 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
50463 |
gccttaaaatggctcatgagattg |
50486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 8572564 - 8572792
Alignment:
| Q |
103 |
tttgctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacac |
202 |
Q |
| |
|
|||||||| | |||| ||||| |||||||||||||| ||||| |||||||||||| |||||||| ||||| |||||||| ||||| |||| ||| || |
|
|
| T |
8572564 |
tttgctgacatttttcttttcataggttggcttctgttgccttacgtgaatttggaaggattaataatgtgaaagatgaattagaaagtcttacgaagac |
8572663 |
T |
|
| Q |
203 |
agttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttctt |
302 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||| | ||||||||| |||||| | ||||||||||||||||| |||||||||||| |||||| || |
|
|
| T |
8572664 |
agttgaatccatcagagctgcgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatgtgcttgtt |
8572763 |
T |
|
| Q |
303 |
cctgctgatgatttgatagatgaatttct |
331 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
8572764 |
gctgcagatgatttgatagatgaatttct |
8572792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 28698524 - 28698752
Alignment:
| Q |
103 |
tttgctgaaaattttgttttcgtaggttggcttctgcagcctttcgtgaatttggacggattaatggtgtgatggatgaattggaaaggcttaagaacac |
202 |
Q |
| |
|
|||||||| | |||| ||||| |||||||||||||| ||||| |||||||||||| |||||||| ||||| |||||||| ||||| |||| ||| || |
|
|
| T |
28698524 |
tttgctgacatttttcttttcataggttggcttctgttgccttacgtgaatttggaaggattaataatgtgaaagatgaattagaaagtcttacgaagac |
28698623 |
T |
|
| Q |
203 |
agttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttctt |
302 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||| | ||||||||| |||||| | ||||||||||||||||| |||||||||||| |||||| || |
|
|
| T |
28698624 |
agttgaatccatcagagctgcgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatgtgcttgtt |
28698723 |
T |
|
| Q |
303 |
cctgctgatgatttgatagatgaatttct |
331 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
28698724 |
gctgcagatgatttgatagatgaatttct |
28698752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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