View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_20 (Length: 476)

Name: NF0875_low_20
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_20
NF0875_low_20
[»] chr6 (1 HSPs)
chr6 (96-476)||(7367993-7368377)
[»] chr3 (2 HSPs)
chr3 (224-476)||(53161170-53161430)
chr3 (95-207)||(53161486-53161597)
[»] chr4 (3 HSPs)
chr4 (146-323)||(51033011-51033189)
chr4 (354-476)||(51032823-51032956)
chr4 (357-404)||(18809196-18809243)
[»] chr7 (6 HSPs)
chr7 (216-339)||(45623596-45623720)
chr7 (146-323)||(26643202-26643383)
chr7 (354-476)||(45631922-45632054)
chr7 (96-205)||(45623439-45623547)
chr7 (354-404)||(26643435-26643485)
chr7 (357-404)||(18565799-18565846)
[»] chr2 (3 HSPs)
chr2 (216-322)||(39905226-39905329)
chr2 (354-476)||(39905394-39905524)
chr2 (357-404)||(44483404-44483451)
[»] chr5 (1 HSPs)
chr5 (365-404)||(19833692-19833731)
[»] scaffold0164 (1 HSPs)
scaffold0164 (363-404)||(16553-16594)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 96 - 476
Target Start/End: Original strand, 7367993 - 7368377
Alignment:
Q  96 gttaccgaaattcaaaataaaatgtaacttcttcttttttgatnnnnnnncaaatgtaacttcttctgcctcttttccattacaagcttcgattacaatt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7367993 gttaccgaaattcaaaataaaatgtaacttcttcttttttgataaaaa--caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatt 7368090  T
Q  196 tcaccatctaccnnnnnnnn---------attactcccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattcct 286  Q
    ||||||||||||                 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7368091 tcaccatctaccttttttattttatttttattactaccatttctttccattgatattctcaacatgaaatgaggtgggctatttaaattaattcattcct 7368190  T
Q  287 taatcctttcttcttataattgtatacaaatatcttatatggaaagggataacnnnnnnnnnnnnnnctaaagggagaggagttgaaaggaaatggtaaa 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||    
T  7368191 taatcctttcttcttataattgtatacaaatatcttatatggaaagggataac----caaaaaaaaactaaagggagaggagttgaaaggaaatggtaaa 7368286  T
Q  387 ttctatggcatgtttcaa-cgacttgaaatctaatttcttttctatgatatctcttctttgtttctttccattgcaacttaattttttact 476  Q
    || |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7368287 ttgtatggcatgtttcaagtgacttgaaatctaatttcttttctatgatatctcttctttgtttctttccattgcaacttaattttttact 7368377  T

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Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 224 - 476
Target Start/End: Complemental strand, 53161430 - 53161170
Alignment:
Q  224 catttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta 323  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53161430 catttctttccattgatattctcaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta 53161331  T
Q  324 t-atggaaagggataacnnnnnnnnnnnnnnctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa-----------cgacttg 411  Q
    | |||||||| ||||||              |||||||| ||||||||||||| || |||||||||||||||||||||||||            ||||||    
T  53161330 taatggaaagagataac----caaaatataactaaagggggaggagttgaaagtaactggtaaattctatggcatgtttcaaatcaaaggctgtgacttg 53161235  T
Q  412 aaatctaatttcttttctatgatatctcttctttgtttctttccattgcaacttaattttttact 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53161234 aaatctaatttcttttctatgatatctcttctttgtttctttccattgcaacttaattttttact 53161170  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 53161597 - 53161486
Alignment:
Q  95 agttaccgaaattcaaaataaaa-tgtaacttcttcttttttgatnnnnnnncaaatgtaacttcttctgcctcttttccattacaagcttcgattacaa 193  Q
    ||||||||||||||||||||||| | |||||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53161597 agttaccgaaattcaaaataaaaatataacttcttcttttttgataaaaa--caaatgtaacttcttctgcctcttttccattacaaccttcgattacaa 53161500  T
Q  194 tttcaccatctacc 207  Q
    ||||||| ||||||    
T  53161499 tttcaccttctacc 53161486  T

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Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 146 - 323
Target Start/End: Complemental strand, 51033189 - 51033011
Alignment:
Q  146 caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccnnnnnnnn-attactcccatttctttccattgatattc 244  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||||||||||| | ||||||         |||||| ||||||||||||||||||||||    
T  51033189 caaatgtaacttcttctacctcttttccattataaccttcggttacaatttcatcttctaccatttttttcattactaccatttctttccattgatattc 51033090  T
Q  245 ttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta 323  Q
    | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51033089 tcaacatgaaatgaggtggaccatttaaattaattcattccttaatcctttcttcttataattgtatagaaatatctta 51033011  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 51032956 - 51032823
Alignment:
Q  354 ctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaac-----------gacttgaaatctaatttcttttctatgatatctcttc 442  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||||||            |||||| ||||||| |||||||||||||||  |||||    
T  51032956 ctaaagggaaaggagttgaaaggaaatggcaaattttatggcatgtttcaaatcaaaggttgtgacttgcaatctaacttcttttctatgatacatcttc 51032857  T
Q  443 tttgtttctttccattgcaacttaattttttact 476  Q
    ||| ||||| || |||||||||||||||||||||    
T  51032856 tttatttctctctattgcaacttaattttttact 51032823  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 18809196 - 18809243
Alignment:
Q  357 aagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 404  Q
    ||||| |||||||||||||||||||| |||||||||| | ||||||||    
T  18809196 aagggggaggagttgaaaggaaatggaaaattctatgacgtgtttcaa 18809243  T

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Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 45623596 - 45623720
Alignment:
Q  216 attactcccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaa 315  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45623596 attactaccatttctttccattcatattctcaacatgaaatgaggtgggctatttaaattaattcattctttaatcctttcttcttataattgtatacaa 45623695  T
Q  316 atatcttat-atggaaagggataac 339  Q
    ||||||||| |||||||| ||||||    
T  45623696 atatcttataatggaaagagataac 45623720  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 146 - 323
Target Start/End: Original strand, 26643202 - 26643383
Alignment:
Q  146 caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccnnnnnnnn-attactcccatttctttccattgatattc 244  Q
    ||||||||||||||||| | ||||||||||||||| ||||| ||||||||||| | ||||||         |||||| |||||||||||||| |||||||    
T  26643202 caaatgtaacttcttctacgtcttttccattacaaccttcggttacaatttcatcttctaccatttttttcattactaccatttctttccatcgatattc 26643301  T
Q  245 ttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttctt---ataattgtatacaaatatctta 323  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  26643302 tcaacatgaaatgaggtgggccatttaaattaattcattccttaatcctttcttcttataataattgtatacaaatatctta 26643383  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 45631922 - 45632054
Alignment:
Q  354 ctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaac----------gacttgaaatctaatttcttttctatgatatctcttct 443  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| ||| ||           ||||||||||||||||||||||||||||||||||||||    
T  45631922 ctaaaggggaaggagttgaaatgaaatggtaaattctatggcatttttaaatcaaaggttgtgacttgaaatctaatttcttttctatgatatctcttct 45632021  T
Q  444 ttgtttctttccattgcaacttaattttttact 476  Q
    |||||||||||||||||||||||||||||||||    
T  45632022 ttgtttctttccattgcaacttaattttttact 45632054  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 45623439 - 45623547
Alignment:
Q  96 gttaccgaaattcaaaataaaa-tgtaacttcttcttttttgatnnnnnnncaaatgtaacttcttctgcctcttttccattacaagcttcgattacaat 194  Q
    |||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  45623439 gttaccgaaattcaaaataaaaatgtaacttcttcttttttgataaaaa--caaatgtaacttcttctgcctcttttccattacaactttcgattacaat 45623536  T
Q  195 ttcaccatcta 205  Q
    |||||| ||||    
T  45623537 ttcaccttcta 45623547  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 26643435 - 26643485
Alignment:
Q  354 ctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 404  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  26643435 ctaaagggaaaggagttgaaaggaaatggtaaattccatggcatgtttcaa 26643485  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 18565799 - 18565846
Alignment:
Q  357 aagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 404  Q
    ||||| |||||||||||||||||||| |||||||||||| | ||||||    
T  18565799 aagggggaggagttgaaaggaaatggaaaattctatggcgtatttcaa 18565846  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 39905226 - 39905329
Alignment:
Q  216 attactcccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaa 315  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||| ||  || ||||||||||||||||||||||||||||||||   ||||||| |||    
T  39905226 attactaccattgctttccattgatattctcaacatgaaatgaggtaggtcatataaattaattcattccttaatcctttcttctt---attgtatccaa 39905322  T
Q  316 atatctt 322  Q
    |||||||    
T  39905323 atatctt 39905329  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 39905394 - 39905524
Alignment:
Q  354 ctaaagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaac-----------gacttgaaatctaatttcttttctatgatatctcttc 442  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||| ||            ||||||||||||||||||||| |||||||| ||||||    
T  39905394 ctaaagggagagg--ttgaaaggaaatggtaaattctatagcatgtttaaaatcaaaggttgtgacttgaaatctaatttcttt-ctatgatacctcttc 39905490  T
Q  443 tttgtttctttccattgcaacttaattttttact 476  Q
    |||||||||   ||||||||||||||| ||||||    
T  39905491 tttgtttctccacattgcaacttaattgtttact 39905524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 44483451 - 44483404
Alignment:
Q  357 aagggagaggagttgaaaggaaatggtaaattctatggcatgtttcaa 404  Q
    ||||| |||||||||||||||||| | |||||||||||| ||||||||    
T  44483451 aagggggaggagttgaaaggaaattgaaaattctatggcgtgtttcaa 44483404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 19833692 - 19833731
Alignment:
Q  365 ggagttgaaaggaaatggtaaattctatggcatgtttcaa 404  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  19833692 ggagttgaaaggaaatggaaaattctatggcgtgtttcaa 19833731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 16553 - 16594
Alignment:
Q  363 gaggagttgaaaggaaatggtaaattctatggcatgtttcaa 404  Q
    |||||||||||||||||||  |||||||||||| ||||||||    
T  16553 gaggagttgaaaggaaatgaaaaattctatggcgtgtttcaa 16594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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