View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_21 (Length: 462)
Name: NF0875_low_21
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 21 - 431
Target Start/End: Original strand, 15442933 - 15443343
Alignment:
| Q |
21 |
catcatcatcatcctatacaacaactacctctaaatcatctggaactaaatatccaaccatggacaagatcttcggaattagaaattagaaaatatttga |
120 |
Q |
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| T |
15442933 |
catcatcatcatcctctgcaacaactacctctaaatcaactggaactaaatacccaaccatggacaagatcttcggaattagaaattagaaaatatttga |
15443032 |
T |
|
| Q |
121 |
tttaattgtacttttggtcttccagtgtttgtgattgtgcgattataacccccttcatctttagcaattttggctgctataagtagggagttaaaattgc |
220 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
15443033 |
tttaattgcacttttggtcttccagtgtttgtgattgtgcgattataacccccttcatctttagcaattttggctgttataagtagggagttaaaatttc |
15443132 |
T |
|
| Q |
221 |
acaatcacaactctttggaggattaaaattgcaattatcccataatatttttagtttattagtatcgtcaaagaaagtgtgtttaacagaagttttatta |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
15443133 |
acaatcacaactctttggaggattaaaattgcaattatcccataatatttttagtttattagtatcgtcaaagaaagtgtttttaataggagttttatta |
15443232 |
T |
|
| Q |
321 |
attacagcatgtacttgtgtaatttcctttattcattgatttcaatttgtttatgaaatatatattcttttgtattgtaagttttaagaaagtttatact |
420 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
15443233 |
attacagcatgtacttatgtaatttcctttattcattgatttcaatttgtttatgaaatatatattcttttgtattgtaacttataagaaagtttatact |
15443332 |
T |
|
| Q |
421 |
ctattttcttt |
431 |
Q |
| |
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||||||||||| |
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| T |
15443333 |
ctattttcttt |
15443343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 73 - 424
Target Start/End: Original strand, 15462227 - 15462597
Alignment:
| Q |
73 |
tccaaccatggacaagatcttcggaattagaaattagaaaatatttgatttaattgtacttttggtcttccagtgtttgtgattgtgcgattataacccc |
172 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||| || || | |||||||||||||| ||||||| |
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| T |
15462227 |
tccaaccatggacaagatctttggaattagaaattagaaaatatcagatttaattgcacttttgatctttcaatgatcgtgattgtgcgattttaacccc |
15462326 |
T |
|
| Q |
173 |
ct-tcatctttagcaattttggctgctata------agtagggagttaaaattgcacaatcacaactctttggaggattaaaattgcaattatcccataa |
265 |
Q |
| |
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| | || ||||| |||||||| ||||| ||| |||||||||| || ||||||||||| |||||||||||||||||||||| |||| ||| | |
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| T |
15462327 |
ccgtaatatttagagattttggcatctatatatataagtggggagttaaagttccacaatcacaatactttggaggattaaaattgcaactatcacatga |
15462426 |
T |
|
| Q |
266 |
tattttta-------gtttattagtatcgtcaaa----gaaagtgtgtttaacagaagtttt-attaattacagcatgtacttgtgtaatttcctttatt |
353 |
Q |
| |
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||| |||| ||||| ||||||||||||| |||||| ||| || ||||||| | ||||||||||||||| | ||||| |||| ||||| |
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| T |
15462427 |
tatctttacaagtttgtttaatagtatcgtcaaataaagaaagtctgtgtagtccaagtttttactaattacagcatgtatctatgtaacttccattatt |
15462526 |
T |
|
| Q |
354 |
cattgatttcaatttgtttatgaaatatatattcttttgtattgtaagttttaagaaagtttatactctat |
424 |
Q |
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| T |
15462527 |
cattgatttcaatttatttatgaaatatatattcttttgtatttgaagttataagaaaggttatagtctat |
15462597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 198 - 431
Target Start/End: Original strand, 15452442 - 15452684
Alignment:
| Q |
198 |
tataagtagggagttaaaattgcacaatcacaact-ctttggaggattaaaattgcaattatcccataatattttta-------gtttattagtatcgtc |
289 |
Q |
| |
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||||||| |||||||||| || |||||||||| | |||||||||||||||||||||| |||| ||||||||||||| ||| | |||||||||| |
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| T |
15452442 |
tataagtggggagttaaagttccacaatcacacatactttggaggattaaaattgcaactatcacataatatttttacaagtttgttcaatagtatcgtc |
15452541 |
T |
|
| Q |
290 |
aaagaaagtgtgtttaacagaagtttt-attaattacagcatgtacttgtgtaatttcctttattcattgatttcaatttgtttatgaaatatatattct |
388 |
Q |
| |
|
|| |||||| |||||| | ||||| |||||||||||||| || | ||||| |||| |||||||||||||| ||||||||| ||||||||||||||| |
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| T |
15452542 |
aaggaaagtctgtttagtctatgtttttattaattacagcatatatctatgtaacttccattattcattgattttaatttgtttctgaaatatatattct |
15452641 |
T |
|
| Q |
389 |
tttgtattgtaagttttaagaaagtttatactctattttcttt |
431 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||||||| |||| |
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| T |
15452642 |
tttgtatttgaagttataagaaggtttatagtctatttgcttt |
15452684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 15436565 - 15436646
Alignment:
| Q |
37 |
tacaacaactacctctaaatcatctggaactaaatatccaaccatggacaagatcttcggaattagaaattagaaaatattt |
118 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
15436565 |
tacaacaactacctctaaatcaactgggactaaacatccaaccatggggcagatctttggaattagaaactagaaaatattt |
15436646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 15452310 - 15452385
Alignment:
| Q |
62 |
ggaactaaatatccaaccatggacaagatcttcggaattagaaattagaaaatatttgatttaattgtacttttggtcttcca |
144 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||| |
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| T |
15452310 |
ggaactaaacctccaaccatggacaagatcttcgg-------aattagaaaatatcagatttaattgcacttttgttcttcca |
15452385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 25707217 - 25707184
Alignment:
| Q |
423 |
attttctttcacatgctgcactagttggattcat |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
25707217 |
attttctttcacatgctgcactagttggattcat |
25707184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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