View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_24 (Length: 445)
Name: NF0875_low_24
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 179 - 343
Target Start/End: Complemental strand, 7243824 - 7243660
Alignment:
| Q |
179 |
actctccaaattttaattattacatactgtactttagttacggatatggtactaattggtactaattcacatgctccgaattttcttactcagttaatta |
278 |
Q |
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| T |
7243824 |
actctccaaattttaattattacatactgtactttagttacggatatggtactaattggtactaattcacatgctccgaatttttttactcagttaatta |
7243725 |
T |
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| Q |
279 |
atttttaattagatactttaattatggatataattgataggctcccaaaactgtacaaagttgag |
343 |
Q |
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| T |
7243724 |
atttttaattagatagtttaattatggatataattgataggctcccaaaattgtacaaagttgag |
7243660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 7243976 - 7243872
Alignment:
| Q |
25 |
aaagggagtgtgattgattgatttatatagaagaacgcgtgtgtgcgtggatggtggtggaaagtaaagaaccagaaaccgttataacgctgtttttctc |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
7243976 |
aaagggagtgtgattgattgatttatatagaagaacgcgtgtgtgcgtggatggtggtggaaagtaaagaaccagaaaccgttattatgctgtttttctc |
7243877 |
T |
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| Q |
125 |
cgtca |
129 |
Q |
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||||| |
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| T |
7243876 |
cgtca |
7243872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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