View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_25 (Length: 444)
Name: NF0875_low_25
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 43395470 - 43395872
Alignment:
| Q |
1 |
tcatcaaaacaaaaggaaataaaatttaattattagtaaatgtttagtttcatgcataaagaatctggtcgaaatacatattagaatctagatattaacc |
100 |
Q |
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| T |
43395470 |
tcatcaaaacataagaaaataaaatttaattattagtaaatgtttagtttcatgcataaagaatctggtcgaaatacatattagaatctagatattaacc |
43395569 |
T |
|
| Q |
101 |
tctaatatcattattttattttgcgaatgtacgggtctttttactagttaaaattagaaatcagcttaattgttcatgtcaatatttcagtgcacaatta |
200 |
Q |
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| T |
43395570 |
tctaatatcattat-----tttgcgaatgtaagggtctttttactagttaaaattagaaatcagcttaattgttcatgtcaatatttcagtgcacaatta |
43395664 |
T |
|
| Q |
201 |
actttttgtaaccaagatgaaagtgaaaaagccttaaacaagtttcattgtataatctgatgcagatacagaacagcagaaggaatcagtgatgagatac |
300 |
Q |
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| T |
43395665 |
actttttgtaaccaagatcaaagtgaaaaacccttaaacaagtttcattgtataatctgatgcagatacagaacagcagaaggaatcagtgatgagatac |
43395764 |
T |
|
| Q |
301 |
tatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatggatctcctgcaactgcagtacacaaatggtt |
400 |
Q |
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| T |
43395765 |
tatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatggatctcctgcaactgcagtacacaaatggtt |
43395864 |
T |
|
| Q |
401 |
ttccaaca |
408 |
Q |
| |
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|||||||| |
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| T |
43395865 |
ttccaaca |
43395872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 436
Target Start/End: Complemental strand, 46494556 - 46494522
Alignment:
| Q |
402 |
tccaacaaggtattattcttattcctcttcatctc |
436 |
Q |
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| T |
46494556 |
tccaacaaggtattattcttattcctcttcatctc |
46494522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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