View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_26 (Length: 440)
Name: NF0875_low_26
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 6084946 - 6084542
Alignment:
| Q |
30 |
agtatgacggtattgaaataagaaagtaaatgctaaaatgttctgaaatcatattacagtattgcatacataactaata---tatatattgaaggattag |
126 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6084946 |
agtatgacagtattgaaataagaaagtaaatgctaaaatgttctgaaatcatattacagtattgcatacataactaataatatatatattgaaggattag |
6084847 |
T |
|
| Q |
127 |
aattacttcacacctttcaagctgaagctgaagttcaacacattttgtatctaattcttcacaaaagtggttcttgctctccaattccacttctaatgct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6084846 |
aattacttcacacctttcaagctgaagctgaagttcaacacattttgtatctaattcttcacaaaagtggttcttgctctccaattccacttctaatgct |
6084747 |
T |
|
| Q |
227 |
aaaatcttgtgataagcctcttttaattcagtttctgtaagctgagtgtcaagatatctacttaaggatttttcattttgtatttgatcttcaagtcttc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6084746 |
aaaatcttgtgataagcctcttttaattcagtttctgtaagctgagtgtcaagatatctacttaaggatttttcattttgtatttgatcttcaagtcttc |
6084647 |
T |
|
| Q |
327 |
tgttggattcttttaatgtttgcaactccaatcttaagttggcaatagtattctctaattcctgaaatcgactcgtatccgcttgcaacttttctgcatc |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6084646 |
tgttggattcttttaatgtttgcaactccaatcttaagttggcaatagtattctctaattcctgaaatcgactcgtatccgcttgcaacttttctgcatc |
6084547 |
T |
|
| Q |
427 |
tgtgc |
431 |
Q |
| |
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||||| |
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|
| T |
6084546 |
tgtgc |
6084542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 39105926 - 39106045
Alignment:
| Q |
138 |
acctttcaagctgaagctgaagttcaacacattttgtatctaattcttcacaaaagtggttcttgctctccaattccacttctaatgctaaaatcttgtg |
237 |
Q |
| |
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||||||||||||| || || | ||||| |||| | || |||||||| |||||| |||||||||| |||| | ||||||||||||| | |||| |||| | |
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| T |
39105926 |
acctttcaagctggagttgcaattcaagacatctggtctctaattcctcacaactgtggttcttgttctctagttccacttctaattccaaaaccttgag |
39106025 |
T |
|
| Q |
238 |
ataagcctcttttaattcag |
257 |
Q |
| |
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| | ||||||||||||||| |
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| T |
39106026 |
accaacctcttttaattcag |
39106045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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