View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0875_low_28 (Length: 422)
Name: NF0875_low_28
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 382
Target Start/End: Complemental strand, 30787262 - 30786888
Alignment:
| Q |
30 |
cattgtgccactcaccttctccttcaaccttttatcgcaagcccaggaagaagccataaccatcaccgtggccatcacgagataccccaccagcttgtcc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30787262 |
cattgtgccactcaccttctccttcaaccttttatcgcaagcccaggaagaagccataaccatcaccgtggccgtcacgagataccccaccagcttgtcc |
30787163 |
T |
|
| Q |
130 |
ctttccttcgtgatttcactatcggaatctctcccgccaccatgtccattttctgccgcatatcccatgtccgatctcgtccgccaccgagccattcgtc |
229 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
30787162 |
ctttccttcgtgcattcactttcggaatctctcccgccaccatgtccattttctgccgcatatcccatgtcggatctcgtccgccgccgagccattcgtc |
30787063 |
T |
|
| Q |
230 |
agcacgga----------------------gctgcgatttcaaatttatggtagaaaacaacagatctttgattcaaatattaacctcttatgcaacaaa |
307 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30787062 |
agcacggagttgcgatttcgttggtgcaaggctgcgatttcaaatttatggtagaaaacaacagatctttgattcaaatattaacctcttatgcaacaaa |
30786963 |
T |
|
| Q |
308 |
taattcaatttcttgatcgattgtcacttcacatgttcattgctgcaactgcataagcttcgattcaagagttta |
382 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30786962 |
taattcaatttcttgatcaattgtcacttcacatgttcattgctgcaactgcataagctttgattcaagagttta |
30786888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 386
Target Start/End: Original strand, 12685165 - 12685544
Alignment:
| Q |
30 |
cattgtgccactcaccttctccttcaaccttttatcgcaagcccaggaagaagccataaccatcaccgtggccatcacgagataccccaccagcttgtcc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||| |
|
|
| T |
12685165 |
cattgtgccactcaccttctccttcaaccttttatcacaagcccaggaagaagccataaccatcaccgtcgccgtcgcgggataccccaccagcttgtcc |
12685264 |
T |
|
| Q |
130 |
ctttccttcgtgatttcactatcggaatctctcccgccaccatgtccattttctgccgcatatcccatgtc-cgatctcgtccgccaccgagccattcgt |
228 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
12685265 |
ctttccttcatgcattcactatcggaatctctcccgccaccatgtccattttctgccgcatatcccatgtcgggatctcgtccgccgccgagccattcgt |
12685364 |
T |
|
| Q |
229 |
cagca----------------------cggagctgcgatttcaaatttatggtagaaaacaacagatctttgattcaaatattaacctcttatgcaacaa |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
12685365 |
cagcacagagctgcgatttcgtcggtgcggagctgcgatttcaaatttatggtagaaaacaacagatctttgattcgaatatgaacctcttatgcaacaa |
12685464 |
T |
|
| Q |
307 |
ataattcaatttcttgatcgattgtcacttcacatgttcattgctgcaactgcataagcttcgattcaagagtttatgat |
386 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12685465 |
ataattcaatttcttgatcaattgtcacttcacatgttcattgctgcaactgcataagcttcgattcgagagtttatgat |
12685544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 404
Target Start/End: Complemental strand, 6172023 - 6171633
Alignment:
| Q |
30 |
cattgtgccactcaccttctccttcaaccttttatcgcaagcccaggaagaagccataaccatcaccgtggccatcacgagataccccaccagcttgtcc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || || |||||||||||| ||||||| |
|
|
| T |
6172023 |
cattgtgccactcaccttctccttcaaccttttatcgcaagccca---agaagtcataaccatcaccgtggccgtcgcgggataccccaccaccttgtcc |
6171927 |
T |
|
| Q |
130 |
ctttccttcgtgatttcactatcggaatctctcccgccaccatgtccattttctgccgcatatcccatgtccg-atctcgtccgccaccgagccattcgt |
228 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||||| || |||||||| | |
|
|
| T |
6171926 |
ctttccttcgtgcatttactattggaatctctcctgc-accatgtccattttctgccgcatatcccatgttgggatctcgtccgccgccaagccattcat |
6171828 |
T |
|
| Q |
229 |
cagcacggagctgcgatttc-------------------aaatttatggtagaaaacaacagatctttgattcaaatattaacctcttatgcaacaaata |
309 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
6171827 |
cagcatggagctgcgatttcggtgcagagctgtgatttcaaatttatggtagaaaacaacagatctgtgatttgaatattaacctcttatgcaacaaata |
6171728 |
T |
|
| Q |
310 |
attcaatttcttgatcgattgtcacttcacatgttcattgctgcaactgcataagcttcgattcaagagtttatgattcgattagccttgggttt |
404 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6171727 |
attcaatttcttgatcaattgtcacttcatatgttcattgttgcaacaacataagcttcgattcaagagtttatgattcgattaaccttgggttt |
6171633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 283 - 411
Target Start/End: Complemental strand, 27815176 - 27815048
Alignment:
| Q |
283 |
aaatattaacctcttatgcaacaaataattcaatttcttgatcgattgtcacttcacatgttcattgctgcaactgcataagcttcgattcaagagttta |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27815176 |
aaatattaacctcttatgcaacaaataattcaatttcttgataaattgtcacttcacatgttcattgctgcaactgcataagcttcgattcaacagttta |
27815077 |
T |
|
| Q |
383 |
tgattcgattagccttgggtttgttctct |
411 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27815076 |
tgattcgattagccttgggtttgttctct |
27815048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2058 times since January 2019
Visitors: 6156