View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_3 (Length: 571)
Name: NF0875_low_3
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 65 - 467
Target Start/End: Complemental strand, 7646039 - 7645640
Alignment:
| Q |
65 |
tctcattcctttggagaagggtatgctacgaggtctgatgaagaaggatttggagggatatatagtggaaaccaatcccttcagaaagataagtccgtcc |
164 |
Q |
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| T |
7646039 |
tctcattcctttggagaagggtatgctacaaggtctgatgaagaaggatttggagggatatatggtggaaaccaatcccttcagaaagataagtccgtcc |
7645940 |
T |
|
| Q |
165 |
atgaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaactagnnnnnnnccttacgtttaaaacattttacaccgtcaatttc |
264 |
Q |
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| T |
7645939 |
atgaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaactagtttttttccttacgtttaaaacattttacaccgtcattttc |
7645840 |
T |
|
| Q |
265 |
ttattacttttgtagaggtcatgatggaaattaattattaagcctaattcagacttgtttgtttttgtgcatgaagattatgacaagacacagggaagcg |
364 |
Q |
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| T |
7645839 |
ttattacttttgtagaggtcatg---gaaattaattattaagcctaattaagacttgtttgtttttgtgcatgaagattatgacaagacacagggaagcg |
7645743 |
T |
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| Q |
365 |
aggtgaaagagaaggaaaaagctaggcaccagagcagcgcaaatgcttaggtttttcttgtgtgtagtggtttatgcaataaacacatgtatttgcagtt |
464 |
Q |
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| T |
7645742 |
aggtgaaagagaaggaaaaagctaggcaccagagcagcgccaatgcttaggtttttcttgtgtgtagtggtttatgcaataaacacatgtatttgcagtt |
7645643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 524 - 559
Target Start/End: Complemental strand, 7645583 - 7645548
Alignment:
| Q |
524 |
ctcagagtgataatatggacaattatgtataagtat |
559 |
Q |
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| T |
7645583 |
ctcagagtgataatatggacaattatgtataagtat |
7645548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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