View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0875_low_31 (Length: 404)
Name: NF0875_low_31
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 10298795 - 10298486
Alignment:
| Q |
1 |
catacagttcagtgaagacagagagccgtagcatgtcttggaagcttatttatggtttttagctgtattctttgcaaagaagagag--tgaaaaaactta |
98 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10298795 |
catacagttcagtgaagacagaa--ccgtagcatgtcttggaagcttatttatggtttttagctgtattctttgcaaagaagagagagtgaaaaaacttg |
10298698 |
T |
|
| Q |
99 |
aataaagttttatgtctctgttctagaaatggaaaagagtcgaactactgaatcattgatggaactgcatgaaagatccgtattatatattgactctgtc |
198 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298697 |
aataaagttttatgcctctgttctagaaatggaaaagagtcgaactactgaatcattgatggaactgcatgaaagatccgtattatatattgactctgtc |
10298598 |
T |
|
| Q |
199 |
ttatcatcccgtctcaatnnnnnnnttctttgtattgaaatgaaatactcatctctaggaaatgcacaaaatgcttttcctttttgaaagaatttaatat |
298 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298597 |
ttatcatcccgtctcaataaaaaaattctttgtattgaaatgaaatactcatctctaggaaatgcacaaaatgcttttcctttttgaaagaatttaatat |
10298498 |
T |
|
| Q |
299 |
aggtgtgaaagt |
310 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10298497 |
aggtgtgaaagt |
10298486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 10298251 - 10298172
Alignment:
| Q |
306 |
aaagtggtgagcattgaatgccaaatttagactaaattcagttcttactggattttcgcgactccgaaactcatcatgat |
385 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298251 |
aaagtagtgagcattgaatgccaaatttagactaaattcagttcttactggattttcgcgactccgaaactcatcatgat |
10298172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1369 times since January 2019
Visitors: 6140