View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_32 (Length: 401)
Name: NF0875_low_32
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 25707184 - 25707532
Alignment:
| Q |
12 |
atgaatccaactagtgcagcatgtgaaagaaaatccacaagaaaacccaacctgaaaatattgaaggataaataaacaaactatttggtttataagggca |
111 |
Q |
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| T |
25707184 |
atgaatccaactagtgcagcatgtgaaagaaaatccacaagaaaacccaacctgtaaatattgaaggataaataaacaaactatttggtttataaggaca |
25707283 |
T |
|
| Q |
112 |
aaacagaaaatttacaagaaattcacaagaaatattgcatgctaatgagaaaaccagcacctgaaaataccaaatgcagcttgaaaaattccggcgaaga |
211 |
Q |
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| T |
25707284 |
aaacagaaaatttacaa------------aaattttgcatgctaatgagaaaaccagcacctgaaaataccaaatgcagcttgaaaaattccggtgaaga |
25707371 |
T |
|
| Q |
212 |
aggtgacggtaaagataaaatctctataggcatgaggattagcaacaggatctatgacattggtgaccaaggaagataaaagcatagacactacagctac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25707372 |
aggtgacggtaaagataaaatctctataggcatgaggattagcaacaggatctatgacattggtgaccaaggaagataaaagcatagacactacagctac |
25707471 |
T |
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| Q |
312 |
aggtccaattgcaatgtctcttgagcttcccatcacagcatagataagaggaggaacaata |
372 |
Q |
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| T |
25707472 |
aggtccaattgcaatgtctcttgagcttcccatcacagcatagataagaggaggaacaata |
25707532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 33270696 - 33270784
Alignment:
| Q |
280 |
aaggaagataaaagcatagacactacagctacaggtccaattgcaatgtctcttgagcttcccatcacagcatagataagaggaggaac |
368 |
Q |
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| T |
33270696 |
aaggaagatagcagcagtgacactacggctacaggtccaattgcaatttctcttgaactccccatcacagcatagataagaggaggaac |
33270784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 33270346 - 33270399
Alignment:
| Q |
12 |
atgaatccaactagtgcagcatgtgaaagaaaatccacaagaaaacccaacctg |
65 |
Q |
| |
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|||||||| || |||||||||||||| | ||||||||||||||| ||||||||| |
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| T |
33270346 |
atgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg |
33270399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 39751655 - 39751605
Alignment:
| Q |
15 |
aatccaactagtgcagcatgtgaaagaaaatccacaagaaaacccaacctg |
65 |
Q |
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|||||||| | |||||||||||| |||||||||||||| || ||||||||| |
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| T |
39751655 |
aatccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctg |
39751605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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