View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_34 (Length: 395)

Name: NF0875_low_34
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_34
NF0875_low_34
[»] chr6 (2 HSPs)
chr6 (100-211)||(7368597-7368708)
chr6 (296-395)||(7368416-7368515)
[»] chr3 (3 HSPs)
chr3 (102-211)||(53159591-53159700)
chr3 (296-335)||(53159778-53159817)
chr3 (331-395)||(53161067-53161131)
[»] chr7 (3 HSPs)
chr7 (100-211)||(45632275-45632386)
chr7 (296-395)||(45632093-45632192)
chr7 (296-395)||(26643605-26643705)
[»] chr2 (2 HSPs)
chr2 (136-211)||(39905748-39905823)
chr2 (296-383)||(39905575-39905663)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 7368708 - 7368597
Alignment:
Q  100 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7368708 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactgccacggtcactatagttattaaagaacaaatgaaagagtaaattaa 7368609  T
Q  200 tgattttgtgat 211  Q
    ||||||||||||    
T  7368608 tgattttgtgat 7368597  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 7368515 - 7368416
Alignment:
Q  296 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgacaaatacgacctcttcctttttcagcaatagtactca 395  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7368515 tgcaccatattgaattgttaccggttatgcatcgttgtagcaattggaatgaagtcctagtgacaaatacggcctcttcctttttcagcaatagtactca 7368416  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 53159591 - 53159700
Alignment:
Q  102 aaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatg 201  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53159591 aaagaaacaaagggaaaaagcccataatgtcaaaccggcgacactttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatg 53159690  T
Q  202 attttgtgat 211  Q
    ||||||||||    
T  53159691 attttgtgat 53159700  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 53159778 - 53159817
Alignment:
Q  296 tgcaccatattgaattgttaccggttatggatcgttgtag 335  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53159778 tgcaccatattgaattgttaccggttatggatcgttgtag 53159817  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 53161067 - 53161131
Alignment:
Q  331 tgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactca 395  Q
    |||||||| | |||||||||||||||||| |||||||  |||||||||||||||||||| ||||||    
T  53161067 tgtagcaacttgaatgaagtcctagtgacaaaatacg-tctcttcctttttcagcaataatactca 53161131  T

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Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 45632386 - 45632275
Alignment:
Q  100 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaa 199  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45632386 ttaaagaaacaaagggaaaaagcccataatgtcaaaccggcgacactttaactgccacggtcactctagttattaaagaacaaatgaatgagtaaattaa 45632287  T
Q  200 tgattttgtgat 211  Q
    || |||||||||    
T  45632286 tggttttgtgat 45632275  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 45632192 - 45632093
Alignment:
Q  296 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  |||||| |||||||||||||||||||    
T  45632192 tgcaccatattgaattgttaccggttatggatcgttgtagcaactggaatgaagtcctagtgacaaaatacg-tctcttcatttttcagcaatagtactc 45632094  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 26643705 - 26643605
Alignment:
Q  296 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactc 394  Q
    ||||||||||| | || ||||||||||||||||| | |||| | ||| |||||||| ||||| | ||| |||  ||||||| ||||||||||||||||||    
T  26643705 tgcaccatatttagttattaccggttatggatcgctttagcgactggtatgaagtcgtagtggcaaaacacggtctcttcccttttcagcaatagtactc 26643606  T
Q  395 a 395  Q
    |    
T  26643605 a 26643605  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 39905823 - 39905748
Alignment:
Q  136 ccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 211  Q
    |||||||||||||||||| ||||||||||| |||||| || || ||| ||||||||||||||||||||||||||||    
T  39905823 ccggcgacaccttaactgtcacggtcactccagttataaatgaccaactgaaagagtaaattaatgattttgtgat 39905748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 39905663 - 39905575
Alignment:
Q  296 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcag 383  Q
    ||||||||||| ||||||||||||||||||||| || |||||| ||| |||||||||||||||| ||| ||| |||||||| |||||||    
T  39905663 tgcaccatatttaattgttaccggttatggatctttttagcaactggtatgaagtcctagtgacaaaacacggcctcttcccttttcag 39905575  T

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