View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_38 (Length: 377)
Name: NF0875_low_38
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 29 - 367
Target Start/End: Complemental strand, 54791182 - 54790844
Alignment:
| Q |
29 |
atttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctta |
128 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791182 |
atttggtctgcttcatttactaggtcggtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctta |
54791083 |
T |
|
| Q |
129 |
ctccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791082 |
ctccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
54790983 |
T |
|
| Q |
229 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactcttcttcagagctgtagtccattgaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54790982 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattgaa |
54790883 |
T |
|
| Q |
329 |
gctctgcatacaattacaaatgtcagttcataagtataa |
367 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |
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| T |
54790882 |
gctctgcatacagttacgaatgtcagttcataagtataa |
54790844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 367
Target Start/End: Original strand, 54777963 - 54778301
Alignment:
| Q |
29 |
atttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctta |
128 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54777963 |
atttggtctgcttcatttactaggtcggtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctta |
54778062 |
T |
|
| Q |
129 |
ctccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
228 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54778063 |
ctccggtttcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
54778162 |
T |
|
| Q |
229 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactcttcttcagagctgtagtccattgaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
54778163 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattgaa |
54778262 |
T |
|
| Q |
329 |
gctctgcatacaattacaaatgtcagttcataagtataa |
367 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
54778263 |
gctctgcatacagttacgaatgtcagttcataagtataa |
54778301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 29 - 367
Target Start/End: Complemental strand, 52283840 - 52283502
Alignment:
| Q |
29 |
atttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctta |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52283840 |
atttggtctgcttcatttgctaggtcagtctccaaaaactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctta |
52283741 |
T |
|
| Q |
129 |
ctccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
228 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
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|
| T |
52283740 |
ctccagttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatggacacctgagtgtaccgtttaaattcttcacttt |
52283641 |
T |
|
| Q |
229 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactcttcttcagagctgtagtccattgaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52283640 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcgctgatatctgactcttcttcagagctgtagtccattgaa |
52283541 |
T |
|
| Q |
329 |
gctctgcatacaattacaaatgtcagttcataagtataa |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
52283540 |
gctctgcatacaattacaaatgtcagttcgtaagtataa |
52283502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 31 - 356
Target Start/End: Complemental strand, 799114 - 798789
Alignment:
| Q |
31 |
ttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgcttact |
130 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||| ||||||||||||| ||||||||||| ||||| || | | |||||||||| |||||||||| |||| |
|
|
| T |
799114 |
ttggtctgcttcatttgctaagtcagtcctcaaaaactttgccagagccaggtggtttgctttttgctttgtgcttctgtttgccgaacctttgcctact |
799015 |
T |
|
| Q |
131 |
ccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcactttgt |
230 |
Q |
| |
|
|| | ||||||||||| || ||||||||| ||||| |||||||| || ||||||| ||||| |||||||| || || || || |||||| ||||||| |
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|
| T |
799014 |
ccagatgcatgttgcaacagatccttatacttgaattcttgctttttctttccagagcaatacgggcacctaagagtcccattgttgttcttgactttgt |
798915 |
T |
|
| Q |
231 |
atttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactcttcttcagagctgtagtccattgaagc |
330 |
Q |
| |
|
||||||| || ||||||| | ||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| | |
|
|
| T |
798914 |
atttaccggcccttaactcttcatatggtttctcagagtattcctcgatctcagactcactgatctctgactcttcttcagagctgtagtccattgaaac |
798815 |
T |
|
| Q |
331 |
tctgcatacaattacaaatgtcagtt |
356 |
Q |
| |
|
||||| || ||| |||||||||||| |
|
|
| T |
798814 |
tctgcgtaagatttcaaatgtcagtt |
798789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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