View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0875_low_39 (Length: 352)
Name: NF0875_low_39
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 29 - 339
Target Start/End: Original strand, 49654759 - 49655069
Alignment:
| Q |
29 |
acccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgcannnnnnnn-- |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49654759 |
acccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgcatttttttttt |
49654858 |
T |
|
| Q |
127 |
ctgattttgtttgttctgttataggatagttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttagtc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49654859 |
ctgattttgtttgttctgttataggatagttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttagtc |
49654958 |
T |
|
| Q |
227 |
ggggggctaattttacatttagaagatcttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatgat |
326 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49654959 |
gggg--ctaattttacatttagaagatcttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatgat |
49655056 |
T |
|
| Q |
327 |
gttctaatagcct |
339 |
Q |
| |
|
||||||||||||| |
|
|
| T |
49655057 |
gttctaatagcct |
49655069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 16486406 - 16486487
Alignment:
| Q |
29 |
acccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
16486406 |
acccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaaatgcaagtgggtgttctgttatgtg |
16486487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 21816504 - 21816423
Alignment:
| Q |
29 |
acccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
21816504 |
acccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaaatgcaagtgggtgttctgttatgtg |
21816423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 14381288 - 14381210
Alignment:
| Q |
33 |
ttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtga |
111 |
Q |
| |
|
||||||| |||||||| ||| ||| |||| |||||||| || |||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
14381288 |
ttatcaggttcaatctggaccgttggttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtga |
14381210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 8551537 - 8551505
Alignment:
| Q |
237 |
ttttacatttagaagatcttagtcttaacactg |
269 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
8551537 |
ttttacatttagaagatcttagtcttgacactg |
8551505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 708 times since January 2019
Visitors: 6130