View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_4 (Length: 570)
Name: NF0875_low_4
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 78 - 444
Target Start/End: Original strand, 33479325 - 33479692
Alignment:
| Q |
78 |
atcttatgacaaattagtcttttgtatttaaaagtgtttacattgtaaaaccaattttcattcttaatttatg-tcagttgtaaatttttgtacacgttc |
176 |
Q |
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| T |
33479325 |
atcttctgacaaattagtcttttgtatttaaaagtgtttacattgtaaaaccaattttcattcttaatttatggtcagttgtaaatttgtgtacacgttc |
33479424 |
T |
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| Q |
177 |
acttcataatttaatgatctactataaagaatgtttcacaactctgtactataattagactcttgttgacaacaatagagtggcaattttggagaaaaat |
276 |
Q |
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| T |
33479425 |
acttcataatttaatgatctactataaagaatgtttcacaactcagtactataattagactcttgttgacaacaatagagtggcaattttggagaaaatt |
33479524 |
T |
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| Q |
277 |
tgaaaagatcatattctcatttcgatagatttaatattgtaacaatcattatgatataatttagatgttatctcgattaaatgttgatgaaatttatatt |
376 |
Q |
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| T |
33479525 |
tgaaaagatcatattctcatttcgatagatttaatattgtaacaatcattatgatataatttagatgttatctcgattaaatgttgatgaaatttatatt |
33479624 |
T |
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| Q |
377 |
cttaaatggtcaagagcgaattggtaataataatatgcatagatgaaaaatggaagttgatacatata |
444 |
Q |
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| T |
33479625 |
cttaaatggtcaagagcgaattggtaataataatatgcatagatgaaaaatggaagttgatacatata |
33479692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 431 - 566
Target Start/End: Original strand, 33480679 - 33480814
Alignment:
| Q |
431 |
agttgatacatataatttgacaccaaaaaagaagaaaataaaggatctgtctaaaacttaaagttgatacatagtaaggaaagtttgtttaaggacataa |
530 |
Q |
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| T |
33480679 |
agttgatacatataatttgacaccaaaaaagaagaaaataaaggatctgtctaaaacttaaagttgatacatagtaaggaaagtttgtttaaggacataa |
33480778 |
T |
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| Q |
531 |
atcgaattctggagttgacgaattaatactcttcat |
566 |
Q |
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| T |
33480779 |
atcgaattctggagttgacgaattaatactcttcat |
33480814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 41194251 - 41194315
Alignment:
| Q |
322 |
tcattatgatataatttagatgttatctcgattaaatgttgatgaaatttatattcttaaatggt |
386 |
Q |
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| T |
41194251 |
tcattatgatgtaatttagatgttatcttgatgaattgaagatgtaatttatctttttaaatggt |
41194315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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