View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_43 (Length: 330)
Name: NF0875_low_43
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 44 - 299
Target Start/End: Complemental strand, 2166111 - 2165856
Alignment:
| Q |
44 |
aaactaaatgtacagagttggacttgatattccaatagttgaagtgagatttgagcatataaatgttgaagcaaaagtttatgttggaggcagagctttg |
143 |
Q |
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| T |
2166111 |
aaactaaatgtacagagttggacttgatattccaatagttgaagtgagatttgagcatataaatgttgaagcacaagtttatgttggaggaagagctttg |
2166012 |
T |
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| Q |
144 |
ccttcattgctcaacttctatgctaatgtcttagaggtgattaatcaacatgccactttatgctttctacccttttcttggatttatattatctttgatt |
243 |
Q |
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| T |
2166011 |
ccttcattgctcaacttctatgctaatgtcttagaggtgattaatcaacatgccactttatgctttctacccttttcttggatttatattatctttgatt |
2165912 |
T |
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| Q |
244 |
attatttataaaatgatctctttctttttgttaagggattcttaaattatcttcat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2165911 |
attatttataaaatgatctctttctttttgttaagggattcttaaattatcttcat |
2165856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 2153692 - 2153596
Alignment:
| Q |
55 |
acagagttggacttgatattccaatagttgaagtgagatttgagcatataaatgttgaagcaaaagtttatgttggaggcagagctttgccttcatt |
151 |
Q |
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|||||||||||||||| |||||| | ||||||| ||||||||| |||||||||| |||||| |||||||||||||| | ||||| |||||| |||| |
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| T |
2153692 |
acagagttggacttgaacttccaacaattgaagttagatttgaggatataaatgtggaagcacaagtttatgttggaaggagagcattgcctacatt |
2153596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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