View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_47 (Length: 308)

Name: NF0875_low_47
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_47
NF0875_low_47
[»] chr6 (11 HSPs)
chr6 (1-231)||(26975524-26975754)
chr6 (5-231)||(26636219-26636445)
chr6 (5-231)||(26742185-26742411)
chr6 (1-231)||(26950316-26950546)
chr6 (11-231)||(26959699-26959919)
chr6 (2-231)||(26849285-26849514)
chr6 (11-214)||(27664594-27664797)
chr6 (1-231)||(25074443-25074670)
chr6 (123-231)||(31288878-31288986)
chr6 (11-86)||(31288986-31289061)
chr6 (2-59)||(29843367-29843424)
[»] chr2 (1 HSPs)
chr2 (1-231)||(17992594-17992824)
[»] chr5 (1 HSPs)
chr5 (2-64)||(16691607-16691669)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26975754 - 26975524
Alignment:
Q  1 tagcaatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtc 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975754 tagcaatcaaattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtc 26975655  T
Q  101 tagaagtgagttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaact 200  Q
    ||| ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26975654 tagtagtgagttcacttttaatattcgagatttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaact 26975555  T
Q  201 attttttcaataaaatcgcgttcatattcat 231  Q
    ||||||||||||||||| |||||||||||||    
T  26975554 attttttcaataaaatcacgttcatattcat 26975524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 26636445 - 26636219
Alignment:
Q  5 aatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctaga 104  Q
    ||||| |||||||| ||||||||||||| ||||||| ||||||||  | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26636445 aatcaaattataaattgcttgagcaagttttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctaga 26636346  T
Q  105 agtgagttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattt 204  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26636345 agtgagttcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattt 26636246  T
Q  205 tttcaataaaatcgcgttcatattcat 231  Q
    ||||||||||||| |||||||||||||    
T  26636245 tttcaataaaatcacgttcatattcat 26636219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 26742411 - 26742185
Alignment:
Q  5 aatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctaga 104  Q
    ||||| |||||||| ||||||||||||| ||||||| ||||||||  | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26742411 aatcaaattataaattgcttgagcaagttttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctaga 26742312  T
Q  105 agtgagttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattt 204  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26742311 agtgagttcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattt 26742212  T
Q  205 tttcaataaaatcgcgttcatattcat 231  Q
    ||||||||||||| |||||||||||||    
T  26742211 tttcaataaaatcacgttcatattcat 26742185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26950546 - 26950316
Alignment:
Q  1 tagcaatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtc 100  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||  | || ||||| ||    
T  26950546 tagcaatcaagttataaactgcttgagcaagtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactc 26950447  T
Q  101 tagaagtgagttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaact 200  Q
    |  |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950446 tgaaagtgaattcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaact 26950347  T
Q  201 attttttcaataaaatcgcgttcatattcat 231  Q
    |||||||||||||||||||||||||||||||    
T  26950346 attttttcaataaaatcgcgttcatattcat 26950316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 26959919 - 26959699
Alignment:
Q  11 attataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgag 110  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||  | || ||||| |||  ||||||     
T  26959919 attataaactgcttgagaaagtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaa 26959820  T
Q  111 ttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaa 210  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  26959819 ttcacttttgatattcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaa 26959720  T
Q  211 taaaatcgcgttcatattcat 231  Q
    ||||||| |||||||| ||||    
T  26959719 taaaatcacgttcatactcat 26959699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 26849514 - 26849285
Alignment:
Q  2 agcaatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtct 101  Q
    |||||||  ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |  ||||||||||| ||||  |||| |||    
T  26849514 agcaatcgaattataaactgcttgagcaagtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattct 26849415  T
Q  102 agaagtgagttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaacta 201  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| ||  ||||||    
T  26849414 agaagtgaattcacttctgatattcgagatttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaacta 26849315  T
Q  202 ttttttcaataaaatcgcgttcatattcat 231  Q
    ||||  ||||||||| | ||||||||||||    
T  26849314 ttttcccaataaaatggtgttcatattcat 26849285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 27664594 - 27664797
Alignment:
Q  11 attataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgag 110  Q
    |||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||     
T  27664594 attataaactgcttcagcaagtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaa 27664693  T
Q  111 ttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaa 210  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||| | ||    |||||||||||| |||||||||||||||||||| |||||    
T  27664694 ttcacttctgatattcgagattcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaa 27664793  T
Q  211 taaa 214  Q
    ||||    
T  27664794 taaa 27664797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 25074670 - 25074443
Alignment:
Q  1 tagcaatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtc 100  Q
    ||||||||| |||||||| |||||||||||| |||||||| |||||||| |||||||||| ||||||||||||| | |||||||   || | ||||||||    
T  25074670 tagcaatcaaattataaattgcttgagcaagagttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtc 25074574  T
Q  101 tagaagtgagttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaact 200  Q
    ||||||||| ||||||||||| |||||||||   || ||||| |||||||||| |||||||| |||||  ||||| ||||||| |||||||||| |||||    
T  25074573 tagaagtgaattcacttctgaaattcgagatcgaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaact 25074474  T
Q  201 attttttcaataaaatcgcgttcatattcat 231  Q
    ||||||||||||||||| |||||||||||||    
T  25074473 attttttcaataaaatcacgttcatattcat 25074443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 31288986 - 31288878
Alignment:
Q  123 attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt 222  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt 31288887  T
Q  223 catattcat 231  Q
    |||||||||    
T  31288886 catattcat 31288878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 31289061 - 31288986
Alignment:
Q  11 attataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca 86  Q
    |||||||| |||||||| ||||||||| |||||| |||| ||||||||||| |||||||||||| |||||||||||    
T  31289061 attataaattgcttgagaaagtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca 31288986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 29843367 - 29843424
Alignment:
Q  2 agcaatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttcca 59  Q
    |||||||| |||||||| |||| ||||||||||||| ||||||| ||| ||| |||||    
T  29843367 agcaatcaaattataaattgctcgagcaagtgttgttttacccaatccaccaattcca 29843424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 17992594 - 17992824
Alignment:
Q  1 tagcaatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtc 100  Q
    |||||| || ||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || |  |||||||    
T  17992594 tagcaaccaaattataaactgcttgagcaagagttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtc 17992693  T
Q  101 tagaagtgagttcacttctgatattcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaact 200  Q
    ||||||||| |||||||||||||||||||||||||| ||||  |||||||| ||||||||||  ||||||||||| ||||||| |||   ||||||||||    
T  17992694 tagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaact 17992793  T
Q  201 attttttcaataaaatcgcgttcatattcat 231  Q
    ||||||||||||||||| |||||||||||||    
T  17992794 attttttcaataaaatcacgttcatattcat 17992824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 16691669 - 16691607
Alignment:
Q  2 agcaatcagattataaactgcttgagcaagtgttgtcttacccattcccccagttccaaggat 64  Q
    |||||||| |||||||| |||| ||||||||||||| ||||| ||||| ||| ||||| ||||    
T  16691669 agcaatcaaattataaattgctcgagcaagtgttgttttaccgattcctccaattccatggat 16691607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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