View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_5 (Length: 570)
Name: NF0875_low_5
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 30 - 558
Target Start/End: Original strand, 37039380 - 37039911
Alignment:
| Q |
30 |
gtttgggccgcaatttgcggctgccacaaccactattgtttgacaccatatagcaggccaaaagcgttgtgctgaatccagcacggctatgctattccgc |
129 |
Q |
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| T |
37039380 |
gtttgggccgcaatttgcggctgccacaaccactattgtttgacaccatatcgcaggccaaaagcgttgtgctgaatccagcacggctacgctattccgc |
37039479 |
T |
|
| Q |
130 |
tatagcgtgctattgacagcatagatgttggnnnnnnnnnnnn---ccttctgttttgtgtatatgatgagttcaattgtttttgaagtttgaatgggaa |
226 |
Q |
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| T |
37039480 |
tatagcgtgatattgacagcatggatgttggttggtttttttttttccttctgttttgtgtatatgatgagttcaattgtttttgaagtttgaatgggaa |
37039579 |
T |
|
| Q |
227 |
tgatgatttcaggtacggagaggtgctgaccgagccgagatatatagccttgccttctcttccactgcacagtggttagctgtctcaagtgacaagggaa |
326 |
Q |
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| T |
37039580 |
tgatgatttcaggtacggagaggtgctgaccgagccgagatatatagccttgccttctcttccagtgcacagtggttagctgtctcaagtgacaagggaa |
37039679 |
T |
|
| Q |
327 |
ccgttcatgtcttcaacttgaaggttgattcgggattgttggggcacgacagatcgcatactacatccgaatctagtcctactagcccgtcggcggcttc |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37039680 |
ccgttcatgtcttcaacttgaaggttgattcgggattgctggggcacgacagatcgcatactacatccgagtctagtcctactagcccgtcggcggcttc |
37039779 |
T |
|
| Q |
427 |
gtctctttcatttattagaggtttgtgcatttgtccactgttagttattcattcattagttatcatgtatggagattatgnnnnnnnaagtaactgttga |
526 |
Q |
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| T |
37039780 |
gtctctttcatttattagaggtttgtgcatttgtccactgttagttattcattcattagttatcatgtatggagattatgtttttttaagtaactgttga |
37039879 |
T |
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| Q |
527 |
acaaccataacgacatttgttgttgcaacagc |
558 |
Q |
| |
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|||||||||||| |||||||||||||| |||| |
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| T |
37039880 |
acaaccataacgccatttgttgttgcatcagc |
37039911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 44207357 - 44207433
Alignment:
| Q |
263 |
gagatatatagccttgccttctcttccactgcacagtggttagctgtctcaagtgacaagggaaccgttcatgtctt |
339 |
Q |
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||||||||||| | || || || ||||| || ||||||||||| || |||||||||||||| || ||||||||||| |
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| T |
44207357 |
gagatatatagtttggcgttttcctccacagctcagtggttagcagtttcaagtgacaagggcactgttcatgtctt |
44207433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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