View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_51 (Length: 300)

Name: NF0875_low_51
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_51
NF0875_low_51
[»] chr7 (8 HSPs)
chr7 (1-287)||(27494940-27495226)
chr7 (1-287)||(27501598-27501884)
chr7 (1-287)||(27516390-27516676)
chr7 (151-287)||(27507565-27507701)
chr7 (138-287)||(27492372-27492521)
chr7 (70-98)||(27494934-27494962)
chr7 (70-98)||(27501592-27501620)
chr7 (70-98)||(27516384-27516412)
[»] chr8 (1 HSPs)
chr8 (138-287)||(293526-293675)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27494940 - 27495226
Alignment:
Q  1 caaatcttataataaaacaaaaaattacaatatttcatggcataaatgaatacatctcttaagaaaattacatatcaaatcttataataaaacaaaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27494940 caaatcttataataaaacaaaaaattacaatatttcatggcataaatgaatacatctcttaagaaaattacatatcaaatcttataataaaacaaaaatt 27495039  T
Q  101 acatgtgcataaatgaatacatgtacatatgatatatcattgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactg 200  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27495040 acatgtgcgtaaatgaatacatgtacatatgatatatcactgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactg 27495139  T
Q  201 gcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacag 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27495140 gcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacag 27495226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27501598 - 27501884
Alignment:
Q  1 caaatcttataataaaacaaaaaattacaatatttcatggcataaatgaatacatctcttaagaaaattacatatcaaatcttataataaaacaaaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27501598 caaatcttataataaaacaaaaaattacaatatttcatggcataaatgaatacatctcttaagaaaattacatatcaaatcttataataaaacaaaaatt 27501697  T
Q  101 acatgtgcataaatgaatacatgtacatatgatatatcattgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactg 200  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27501698 acatgtgcgtaaatgaatacatgtacatatgatatatcactgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactg 27501797  T
Q  201 gcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacag 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27501798 gcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacag 27501884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27516390 - 27516676
Alignment:
Q  1 caaatcttataataaaacaaaaaattacaatatttcatggcataaatgaatacatctcttaagaaaattacatatcaaatcttataataaaacaaaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27516390 caaatcttataataaaacaaaaaattacaatatttcatggcataaatgaatacatctcttaagaaaattacatatcaaatcttataataaaacaaaaatt 27516489  T
Q  101 acatgtgcataaatgaatacatgtacatatgatatatcattgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactg 200  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27516490 acatgtgcgtaaatgaatacatgtacatatgatatatcactgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactg 27516589  T
Q  201 gcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacag 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27516590 gcactgttcacagggatataaagccttcaaacttggttgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacag 27516676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 27507565 - 27507701
Alignment:
Q  151 gcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacaa 250  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27507565 gcaaataatgcgccagataattacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacta 27507664  T
Q  251 ggtcggatcaaattcgttgattttggtgcagcaacag 287  Q
    |||||||| ||||||||||||||||||||||||||||    
T  27507665 ggtcggattaaattcgttgattttggtgcagcaacag 27507701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 138 - 287
Target Start/End: Original strand, 27492372 - 27492521
Alignment:
Q  138 cattgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggt 237  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||  |||||||||||| |||||||||| ||||||||    
T  27492372 cattgatcatcaagcaaataatgcgccaaatcattacatctcttaagaaaattcacgacactggcatcgttcacagggatgtaaagccttccaacttggt 27492471  T
Q  238 tgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacag 287  Q
    |||||||||| |||| | ||| ||| || |||||||||||||||||||||    
T  27492472 tgttacaaaaaaagggcagattaaactcattgattttggtgcagcaacag 27492521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 27494934 - 27494962
Alignment:
Q  70 acatatcaaatcttataataaaacaaaaa 98  Q
    |||||||||||||||||||||||||||||    
T  27494934 acatatcaaatcttataataaaacaaaaa 27494962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 27501592 - 27501620
Alignment:
Q  70 acatatcaaatcttataataaaacaaaaa 98  Q
    |||||||||||||||||||||||||||||    
T  27501592 acatatcaaatcttataataaaacaaaaa 27501620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 27516384 - 27516412
Alignment:
Q  70 acatatcaaatcttataataaaacaaaaa 98  Q
    |||||||||||||||||||||||||||||    
T  27516384 acatatcaaatcttataataaaacaaaaa 27516412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 287
Target Start/End: Complemental strand, 293675 - 293526
Alignment:
Q  138 cattgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggt 237  Q
    ||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || |||||||||||  | ||||| ||    
T  293675 cattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagt 293576  T
Q  238 tgttacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacag 287  Q
     || || ||||| || | ||| ||| || ||||||||||||| |||||||    
T  293575 ggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacag 293526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1930 times since January 2019
Visitors: 6151