View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_52 (Length: 299)
Name: NF0875_low_52
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 33170186 - 33169930
Alignment:
| Q |
32 |
tgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatatgtttgttgacaacaaagcttatagagatc |
131 |
Q |
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| T |
33170186 |
tgtgttaacacaacatgcttgccaagaaagcctatggttgtaagagtaaagaaaggagtaagtgccaatatgtttgttgacaataaagcttatagagatc |
33170087 |
T |
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| Q |
132 |
atttgaattgtaaatttgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattagagc |
231 |
Q |
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| T |
33170086 |
atttgaacagcaaatttgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattagagc |
33169987 |
T |
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| Q |
232 |
attgtctgatttagctggaggaggttctgcattgagcaatgaagtatctattttcat |
288 |
Q |
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| T |
33169986 |
attgtctgatttagctggaggaggttctgcattgagcaatgaagtatctattttcat |
33169930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 33154467 - 33154214
Alignment:
| Q |
29 |
agttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatatgtttgttgacaacaaagcttatagag |
128 |
Q |
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| T |
33154467 |
agttgtgtaaacacaacttgcttaccaagaaagcctattgtggtgagagtaaagaaaggggtcactgccaatatatttgttgacaacaaagcatatagag |
33154368 |
T |
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| Q |
129 |
atcatttgaattgtaaatttgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattag |
228 |
Q |
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| T |
33154367 |
atcatttgaattgtaaattcgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattag |
33154268 |
T |
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| Q |
229 |
agcattgtctgatttagctggaggaggttctgcattgagcaatgaagtatctat |
282 |
Q |
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||||||||||||||| |||||||||||||| |||||| |||||||| |||||| |
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| T |
33154267 |
agcattgtctgattttgctggaggaggttcagcattgtccaatgaagcatctat |
33154214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 274
Target Start/End: Complemental strand, 33144727 - 33144482
Alignment:
| Q |
29 |
agttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatatgtttgttgacaacaaagcttatagag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33144727 |
agttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatgtgtttgttgacaacaaagcttatagag |
33144628 |
T |
|
| Q |
129 |
atcatttgaattgtaaatttgatgctactccaacagacatggaaagtgctgcagttgctttagtttgtttccaacacaaaatacctttcattgccattag |
228 |
Q |
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|| |||||| | |||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33144627 |
attttttgaacttgaaatttgatgctactccagtagacatggaaagtgcttctgttgccttagtttgtttccaacacaaaatacctttcattgccattag |
33144528 |
T |
|
| Q |
229 |
agcattgtctgatttagctggaggaggttctgcattgagcaatgaa |
274 |
Q |
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| T |
33144527 |
agcattgtctgatttagctggaggaggttcatcattgaccaatgaa |
33144482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 33148923 - 33148793
Alignment:
| Q |
29 |
agttgtgttaacacaacttgcttgccaagaaagcctattgtggtgagagtaaagaaaggagtaagtgccaatatgtttgttgacaacaaagcttatagag |
128 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| | || |||| |||| ||||||||||||||| || || ||||| |
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| T |
33148923 |
agttgtgttaagacaacttgcttgccaagaaagcctatggtggtgagagtaaaaaaacgggtcagtgtcaatgtgtttgttgacaacagagattgtagag |
33148824 |
T |
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| Q |
129 |
atcatttgaattgtaaatttgatgctactcc |
159 |
Q |
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|||||||||| | ||||||| || |||||| |
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| T |
33148823 |
atcatttgaactccaaatttggtgatactcc |
33148793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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