View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0875_low_54 (Length: 289)
Name: NF0875_low_54
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 46494581 - 46494387
Alignment:
| Q |
1 |
aacaccatcattcatcatggtttcatccaacaaggtattattcttattcctcttcatctctcgtgaattttttcgattatattattttcttagctttgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
46494581 |
aacaccatcattcatcatggtttcatccaacaaggtattattcttattcctcttcatctctcgtgaattttttcgattatatcattttcgtagctttgat |
46494482 |
T |
|
| Q |
101 |
tcacaaaattataccattttccctgaaaataattatgttgttgttaatgattgtaccataaattatttgaattcaacttccaccgtttctctgtg |
195 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46494481 |
tcaaaaaattataccattttccctgaaaataattatgttgttgtcaatgattgtaccataaattatttgaattcaacttccaccgtttctctgtg |
46494387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1690 times since January 2019
Visitors: 6149