View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_57 (Length: 282)
Name: NF0875_low_57
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 51856520 - 51856281
Alignment:
| Q |
29 |
aattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
51856520 |
aattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaa |
51856421 |
T |
|
| Q |
129 |
aggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttccctttt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856420 |
aggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttccctttt |
51856321 |
T |
|
| Q |
229 |
gacaatgtagatacttannnnnnngctctgtgatgatgtc |
268 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
51856320 |
gacaatgtagatacttatttttttgctctgtgatgatgtc |
51856281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 8945706 - 8945467
Alignment:
| Q |
29 |
aattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaa |
128 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
8945706 |
aattatagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaa |
8945607 |
T |
|
| Q |
129 |
aggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttccctttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8945606 |
aggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttccctttt |
8945507 |
T |
|
| Q |
229 |
gacaatgtagatacttannnnnnngctctgtgatgatgtc |
268 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
8945506 |
gacaatgtagatacttatttttttgctctgtgatgatgtc |
8945467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 128421 - 128536
Alignment:
| Q |
34 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggca |
133 |
Q |
| |
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||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||| | |
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| T |
128421 |
gagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggta |
128519 |
T |
|
| Q |
134 |
ttacagaaaaataaaat |
150 |
Q |
| |
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||||||||||| ||||| |
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|
| T |
128520 |
ttacagaaaaaaaaaat |
128536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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