View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_6 (Length: 558)
Name: NF0875_low_6
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 30 - 550
Target Start/End: Original strand, 44155083 - 44155591
Alignment:
| Q |
30 |
acttattgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaat |
129 |
Q |
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| T |
44155083 |
acttattgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaat |
44155182 |
T |
|
| Q |
130 |
attaattctatcgaatcttgtgctacaagtcatgttgcaattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155183 |
attaattctatcgaatcttgtgctacaagtcatgttgagattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaa |
44155282 |
T |
|
| Q |
230 |
atttaatttccaaaataatcctttactcaataagtttacgttgttatttgtttcaatgttatatatctagcaagaataactatcgctgcattaagtgttt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44155283 |
atttaatttccaaaataatcctttactcaataagtttacggtgttatttgtttcaatgttatacatctagcaagaataactatcgctgcattaagtgttt |
44155382 |
T |
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| Q |
330 |
atgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtttttctattg |
429 |
Q |
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| T |
44155383 |
atgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtt--------- |
44155473 |
T |
|
| Q |
430 |
aagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcat |
529 |
Q |
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| T |
44155474 |
---ccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcat |
44155570 |
T |
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| Q |
530 |
cagataagtgcagttcatctc |
550 |
Q |
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||||||||||||||| ||||| |
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| T |
44155571 |
cagataagtgcagtttatctc |
44155591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 314 - 442
Target Start/End: Complemental strand, 40894457 - 40894330
Alignment:
| Q |
314 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
413 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
40894457 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
40894360 |
T |
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| Q |
414 |
caga-gtttttctattgaagccagtcaagt |
442 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
40894359 |
cagaggtttttctattgaagccagtcaagt |
40894330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 329 - 534
Target Start/End: Original strand, 44214434 - 44214638
Alignment:
| Q |
329 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
427 |
Q |
| |
|
|||||| ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||| | | |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
|
| Q |
428 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
527 |
Q |
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| ||||||||||| ||||||| ||| | || ||||||| ||||||||||||||||||||||| | ||| ||| || ||| | | |||||||||||||| |
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| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
|
| Q |
528 |
atcagat |
534 |
Q |
| |
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||||||| |
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| T |
44214632 |
atcagat |
44214638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 508
Target Start/End: Complemental strand, 40894326 - 40894279
Alignment:
| Q |
461 |
tgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
508 |
Q |
| |
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||||||| |||||||||||||||||||| |||| ||||||| |||||| |
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| T |
40894326 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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