View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0875_low_66 (Length: 261)
Name: NF0875_low_66
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_66 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 6976472 - 6976366
Alignment:
| Q |
57 |
cattgacagcagtggaaatagcatcatagacaacaccaggttcagcaagccaagtgcctaaaccaacagatggaatcttagctcctgtgtttaactcaaa |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6976472 |
cattgacagcagtggaaatagcatcatagacaacaccaggttcagcaagccaagtgcctaaaccaacagatggaatcttagctcctgtgtttaactcaaa |
6976373 |
T |
|
| Q |
157 |
gaatctc |
163 |
Q |
| |
|
||||||| |
|
|
| T |
6976372 |
gaatctc |
6976366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 6956989 - 6956883
Alignment:
| Q |
57 |
cattgacagcagtggaaatagcatcatagacaacaccaggttcagcaagccaagtgcctaaaccaacagatggaatcttagctcctgtgtttaactcaaa |
156 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
6956989 |
cattgacagcagtggatatagcatcatagacaacaccaggtgcagcaagccaagtgcctaaaccaacagatggaatcttagctcctgtgttcaattcaaa |
6956890 |
T |
|
| Q |
157 |
gaatctc |
163 |
Q |
| |
|
|||||| |
|
|
| T |
6956889 |
caatctc |
6956883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 6962884 - 6962801
Alignment:
| Q |
64 |
agcagtggaaatagcatcatagacaacaccaggttcagcaagccaagtgcctaaaccaacagatggaatcttagctcctgtgtt |
147 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| ||||||||| || ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6962884 |
agcagtggatgttgcatcgtagacaacaccaggtgtagcaagccatgtctctaaaccaacagaaggaatcttagctccagtgtt |
6962801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 6924677 - 6924603
Alignment:
| Q |
86 |
acaacaccaggttcagcaagccaagtgcctaaaccaacagatggaatcttagctcctgtgtttaactcaaagaat |
160 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||||||| || || ||||| || ||||| |||| ||||||| |
|
|
| T |
6924677 |
acaacaccgggttcagcttgccaagtacctaaaccaacagaagggattttagcaccagtgttcaactgaaagaat |
6924603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2853 times since January 2019
Visitors: 6167