View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0875_low_7 (Length: 547)
Name: NF0875_low_7
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 40403374 - 40403173
Alignment:
| Q |
30 |
cttttaagtttgcgacttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40403374 |
cttttaagtttgcgacttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgta |
40403275 |
T |
|
| Q |
130 |
actatttttcagatgtcttatgtttgttggttccactttgtaaaaaataggccaaacaagttggtttctggtcttcataaagtcaaggatggtgacaagt |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40403274 |
actatttttcagatgtcttatggttgttggttccattttgtaaaaaataggccaaacaagttggtttctggtcttcataaagtcaaggatggtgacaagt |
40403175 |
T |
|
| Q |
230 |
tc |
231 |
Q |
| |
|
|| |
|
|
| T |
40403174 |
tc |
40403173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 39619548 - 39619444
Alignment:
| Q |
45 |
cttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactatttttcagatg |
144 |
Q |
| |
|
||||| |||| |||| | |||||||||| | || |||||||| |||||||| || | ||||| ||| |||| ||||| ||||||||||||||| |||| |
|
|
| T |
39619548 |
cttcagacaatgctgttatccatgcttttacattttcagagtcttttccaaacttaacctcatgatcaaccatggctttctcgtaactatttttctgatg |
39619449 |
T |
|
| Q |
145 |
tctta |
149 |
Q |
| |
|
||||| |
|
|
| T |
39619448 |
tctta |
39619444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 40256675 - 40256826
Alignment:
| Q |
35 |
aagtttgcgacttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactat |
134 |
Q |
| |
|
||||| || |||| ||||||||||||||||||| || | ||||||| | || |||||||| || | |||||||||| ||| ||||| | ||||||| |
|
|
| T |
40256675 |
aagttggcaacttgaaacaaagctgatctccatttttgtatcttctcataatcatttccaaaattattttcatgttcagtcattgctttaccataactat |
40256774 |
T |
|
| Q |
135 |
ttttcagatgtcttatgtttgttggttccactttgtaaaaaataggccaaac |
186 |
Q |
| |
|
| ||| ||| |||| | || ||| ||||||||||||||||| |||||||| |
|
|
| T |
40256775 |
tcttctgataccttacatctgatggctccactttgtaaaaaattggccaaac |
40256826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 40334177 - 40334112
Alignment:
| Q |
224 |
acaagttcgtcaagagacaaggaggaatatgcatagttttcagatagaacaatgatcgaaagtctt |
289 |
Q |
| |
|
|||||||| |||||| || | | ||||| ||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
40334177 |
acaagttcatcaagacaccatgtggaatttgcatagttttcagacaaaacaataatcgaaagtctt |
40334112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 40387455 - 40387390
Alignment:
| Q |
224 |
acaagttcgtcaagagacaaggaggaatatgcatagttttcagatagaacaatgatcgaaagtctt |
289 |
Q |
| |
|
|||||||| |||||| || | | ||||| ||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
40387455 |
acaagttcatcaagacaccatgtggaatttgcatagttttcagacaaaacaataatcgaaagtctt |
40387390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 870 times since January 2019
Visitors: 6134