View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_77 (Length: 249)

Name: NF0875_low_77
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_77
NF0875_low_77
[»] chr8 (11 HSPs)
chr8 (1-202)||(2952335-2952538)
chr8 (1-203)||(5860858-5861062)
chr8 (1-202)||(30883110-30883318)
chr8 (1-128)||(3048631-3048758)
chr8 (138-203)||(20003877-20003943)
chr8 (138-202)||(37430302-37430367)
chr8 (1-38)||(41879133-41879170)
chr8 (138-187)||(3048774-3048823)
chr8 (1-38)||(13534800-13534837)
chr8 (1-38)||(13624340-13624377)
chr8 (138-200)||(41878167-41878230)
[»] chr6 (14 HSPs)
chr6 (1-202)||(21479284-21479486)
chr6 (1-199)||(21280336-21280537)
chr6 (1-202)||(13727513-13727715)
chr6 (1-128)||(33773982-33774109)
chr6 (138-202)||(30832668-30832732)
chr6 (138-204)||(12083641-12083708)
chr6 (138-200)||(23070890-23070953)
chr6 (138-204)||(24711143-24711210)
chr6 (1-38)||(19737806-19737843)
chr6 (138-202)||(19741224-19741289)
chr6 (146-202)||(27314773-27314830)
chr6 (138-187)||(1156018-1156067)
chr6 (138-202)||(33773900-33773964)
chr6 (73-109)||(15645927-15645963)
[»] chr3 (18 HSPs)
chr3 (1-202)||(36716139-36716341)
chr3 (1-203)||(27078683-27078885)
chr3 (1-203)||(27084480-27084682)
chr3 (1-187)||(54619317-54619503)
chr3 (1-202)||(38681207-38681413)
chr3 (5-66)||(29620506-29620567)
chr3 (138-202)||(47467582-47467646)
chr3 (140-202)||(18372033-18372095)
chr3 (138-202)||(42098698-42098763)
chr3 (1-38)||(3954010-3954047)
chr3 (138-202)||(13795187-13795252)
chr3 (1-38)||(18372434-18372471)
chr3 (138-202)||(21582668-21582733)
chr3 (138-203)||(36605846-36605911)
chr3 (138-202)||(50258735-50258800)
chr3 (138-201)||(3954853-3954917)
chr3 (156-202)||(29620618-29620665)
chr3 (138-202)||(53149458-53149523)
[»] chr2 (14 HSPs)
chr2 (1-202)||(3155003-3155205)
chr2 (1-202)||(4505679-4505882)
chr2 (1-200)||(6964794-6964995)
chr2 (1-198)||(8907193-8907391)
chr2 (1-82)||(12337562-12337643)
chr2 (138-202)||(34693147-34693212)
chr2 (138-202)||(34715559-34715624)
chr2 (138-202)||(7162677-7162742)
chr2 (138-202)||(12337690-12337755)
chr2 (156-200)||(5952949-5952993)
chr2 (142-201)||(40635963-40636023)
chr2 (140-202)||(3399509-3399572)
chr2 (138-203)||(3952898-3952964)
chr2 (92-128)||(12337633-12337669)
[»] chr1 (14 HSPs)
chr1 (1-202)||(44655539-44655741)
chr1 (1-82)||(27906830-27906911)
chr1 (1-68)||(34246981-34247048)
chr1 (138-203)||(14146204-14146270)
chr1 (138-198)||(6888473-6888534)
chr1 (142-203)||(41697284-41697346)
chr1 (1-38)||(5316643-5316680)
chr1 (138-187)||(6771712-6771761)
chr1 (138-202)||(16139960-16140025)
chr1 (138-202)||(27906949-27907014)
chr1 (138-202)||(3406323-3406388)
chr1 (138-202)||(3440432-3440497)
chr1 (1-38)||(50881393-50881430)
chr1 (157-203)||(50880567-50880614)
[»] chr7 (8 HSPs)
chr7 (1-202)||(18776879-18777084)
chr7 (1-68)||(40357471-40357538)
chr7 (1-38)||(8171652-8171689)
chr7 (138-202)||(10955378-10955443)
chr7 (138-202)||(12596430-12596495)
chr7 (138-201)||(28749582-28749646)
chr7 (206-243)||(44487806-44487843)
chr7 (1-38)||(29077172-29077209)
[»] chr4 (22 HSPs)
chr4 (1-190)||(38209704-38209894)
chr4 (1-82)||(55255182-55255263)
chr4 (138-202)||(10431443-10431508)
chr4 (138-202)||(55255080-55255145)
chr4 (138-199)||(48208453-48208515)
chr4 (1-38)||(10978857-10978894)
chr4 (1-38)||(13460164-13460201)
chr4 (1-38)||(23509911-23509948)
chr4 (1-38)||(34768687-34768724)
chr4 (138-191)||(34769534-34769587)
chr4 (138-202)||(47127981-47128046)
chr4 (1-38)||(47128944-47128981)
chr4 (138-200)||(13459786-13459849)
chr4 (156-202)||(32915297-32915344)
chr4 (138-199)||(17679220-17679282)
chr4 (138-187)||(1105447-1105496)
chr4 (138-202)||(5128984-5129049)
chr4 (1-38)||(10428318-10428355)
chr4 (138-202)||(37514558-37514623)
chr4 (138-202)||(45560705-45560770)
chr4 (70-113)||(30083362-30083405)
chr4 (1-34)||(48209201-48209234)
[»] chr5 (13 HSPs)
chr5 (2-187)||(34756478-34756664)
chr5 (138-199)||(36188020-36188082)
chr5 (138-202)||(15480230-15480295)
chr5 (138-202)||(19523093-19523158)
chr5 (138-203)||(16592846-16592912)
chr5 (1-38)||(16592185-16592222)
chr5 (138-202)||(31881591-31881656)
chr5 (138-202)||(2274798-2274863)
chr5 (140-202)||(22987470-22987534)
chr5 (3-37)||(22986660-22986694)
chr5 (138-203)||(30853265-30853331)
chr5 (9-38)||(30854282-30854311)
chr5 (138-202)||(31194768-31194833)
[»] scaffold0070 (2 HSPs)
scaffold0070 (138-202)||(1011-1076)
scaffold0070 (1-38)||(1295-1332)
[»] scaffold0001 (1 HSPs)
scaffold0001 (158-202)||(181435-181480)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 2952335 - 2952538
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatctta-gggggcctaagagatattaagggggcc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2952335 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttaggggggcctaagagatattaagggggcc 2952434  T
Q  100 taaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcc 198  Q
    |||||||||||||| ||||||||||||||         |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||    
T  2952435 taaaaagaaaccaccattatactggatataaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcc 2952534  T
Q  199 cctg 202  Q
    ||||    
T  2952535 cctg 2952538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 5860858 - 5861062
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  5860858 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttaggggatctaagagatattaagggggcct 5860957  T
Q  101 aaaaagaaaccactattatactggatat-nnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcc 198  Q
    ||||||||||||| ||||||||||||||          |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||    
T  5860958 aaaaagaaaccaccattatactggatataaaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcc 5861057  T
Q  199 cctgg 203  Q
    |||||    
T  5861058 cctgg 5861062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30883318 - 30883110
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30883318 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 30883219  T
Q  101 aaaaagaaaccactattatactggatat------nnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgcaccc-ctcaggg 193  Q
    ||||||||||||| ||||||||||||||               |||||||||||||| || |||||||| ||||||||| |||||||||||| |||||||    
T  30883218 aaaaagaaaccaccattatactggatataaaaaaaataaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccactcaggg 30883119  T
Q  194 acgcccctg 202  Q
    |||||||||    
T  30883118 acgcccctg 30883110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 3048631 - 3048758
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3048631 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 3048730  T
Q  101 aaaaagaaaccactattatactggatat 128  Q
    ||||||||||||| ||||||||||||||    
T  3048731 aaaaagaaaccaccattatactggatat 3048758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 20003877 - 20003943
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgg 203  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  20003877 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgg 20003943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 37430302 - 37430367
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  37430302 tgaggcccatccttaaggaaggcccaactcgtttgagctgtttgcaccccctcaaggacgcccctg 37430367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41879170 - 41879133
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41879170 ccaaaatcaagaggaactaattctaataatcctaaaag 41879133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 3048774 - 3048823
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccc 187  Q
    |||||||||||||| || |||||||| ||||||||| |||||||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3048823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13534800 - 13534837
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  13534800 ccaaaatcaagagaaactaattctaataatcctaaaag 13534837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13624340 - 13624377
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  13624340 ccaaaatcaagagaaactaattctaataatcctaaaag 13624377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 41878230 - 41878167
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccc 200  Q
    |||||| ||||||| || ||||| |||||||||||| ||||||||| ||||||| |||||||||    
T  41878230 tgaggctcatccttgagggaggctcaactcgtttgagctgtttgcaccccctcaaggacgcccc 41878167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 21479486 - 21479284
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21479486 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 21479387  T
Q  101 aaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    |||||||| |||| ||||||||||||||         |||||||||||||| || |||||||| ||||||| | ||||||||| ||||||||||||||||    
T  21479386 aaaaagaatccaccattatactggatataaaaaaaaatgaggcccatccttgagggaggcccagctcgttttagctgtttgcaccccctcagggacgccc 21479287  T
Q  200 ctg 202  Q
    |||    
T  21479286 ctg 21479284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 21280537 - 21280336
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21280537 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggtctaagagatattaagggggcct 21280438  T
Q  101 aaaaagaaaccactattatactggatat--nnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgc 197  Q
    ||||||||||||| ||||||||||||||           ||| |||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||    
T  21280437 aaaaagaaaccaccattatactggatataaaaaaaaaaatgaagcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgc 21280338  T
Q  198 cc 199  Q
    ||    
T  21280337 cc 21280336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 13727513 - 13727715
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13727513 ccaaaatcaagaggaactaattctaataatcctaaaagaggctcatccttttgagggaatgaaataatcttagggggcctaagagatattaagggggcct 13727612  T
Q  101 aaaaagaaaccactattatactgg-atatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcc 198  Q
    ||||||||||||| |||||||||| |||          ||||||||||| || || |||||||| ||||||||| ||||||||| |||||||||||||||    
T  13727613 aaaaagaaaccaccattatactggtata-aaaaaaaaatgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcc 13727711  T
Q  199 cctg 202  Q
    ||||    
T  13727712 cctg 13727715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 33774109 - 33773982
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  33774109 ccaaaatcaagaggaactaattctaataatcctaaaagagacccatccttgtgagggaatgaaataatcttagggggcctaagagatattaaagggacct 33774010  T
Q  101 aaaaagaaaccactattatactggatat 128  Q
    ||||||||||||| ||||||||||||||    
T  33774009 aaaaagaaaccaccattatactggatat 33773982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 30832668 - 30832732
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||| ||||| |||||||||||||||| |||||||||||    
T  30832668 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccctcaaggacgcccctg 30832732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 12083641 - 12083708
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgga 204  Q
    |||||||||||||| ||  ||||||| ||||||||| ||||||||| ||||||| |||||||||||||    
T  12083641 tgaggcccatccttgaggaaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctgga 12083708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 23070890 - 23070953
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccc 200  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||| |||||||||    
T  23070890 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccc 23070953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 24711143 - 24711210
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgga 204  Q
    ||||||||||||||  | |||||||| || |||||| ||||||||| |||||||||||||||||||||    
T  24711143 tgaggcccatccttgggggaggcccagcttgtttgagctgtttgcaccccctcagggacgcccctgga 24711210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19737806 - 19737843
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  19737806 ccaaaatcaagaggaactaattttaataatcctaaaag 19737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 19741224 - 19741289
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||| |||||||| || |||||||| ||||||||| ||||||||| ||||||||||||| |||||    
T  19741224 tgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgtccctg 19741289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 27314773 - 27314830
Alignment:
Q  146 atccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  27314773 atccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 27314830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 1156018 - 1156067
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccc 187  Q
    ||||||||||||||||| ||| || | ||||||||| |||||||||||||    
T  1156018 tgaggcccatccttaagggagacctagctcgtttgagctgtttgcacccc 1156067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 33773964 - 33773900
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||| |||| | |||||||| |||||||||||||||||||    
T  33773964 tgaggcccatccttgagggaggcccagctcatttg-agtgtttgcaccccctcagggacgcccctg 33773900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 15645927 - 15645963
Alignment:
Q  73 gggggcctaagagatattaagggggcctaaaaagaaa 109  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  15645927 gggggcctaaaagatattgagggggcctaaaaagaaa 15645963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 36716139 - 36716341
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  36716139 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggagtctaagagatattaagggggcct 36716238  T
Q  101 aaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    ||||||||||||| ||||||||||||||         |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||||    
T  36716239 aaaaagaaaccaccattatactggatataaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 36716338  T
Q  200 ctg 202  Q
    |||    
T  36716339 ctg 36716341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27078683 - 27078885
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27078683 ccaaaatcaagatgaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 27078782  T
Q  101 aaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    ||||||||||||| ||||||||||||||         |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||| ||||||    
T  27078783 aaaaagaaaccaccattatactggatat-aaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgccc 27078881  T
Q  200 ctgg 203  Q
    ||||    
T  27078882 ctgg 27078885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27084480 - 27084682
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27084480 ccaaaatcaagatgaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 27084579  T
Q  101 aaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    ||||||||||||| ||||||||||||||         |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||| ||||||    
T  27084580 aaaaagaaaccaccattatactggatat-aaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgccc 27084678  T
Q  200 ctgg 203  Q
    ||||    
T  27084679 ctgg 27084682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 54619317 - 54619503
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54619317 ccaaaatcaagaggaactaattctaataatcctaaaagagacccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 54619416  T
Q  101 aaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccc 187  Q
    ||||| ||||||| ||||||||||||||         |||||||||||||| || |||||||| ||||||||| |||||||||||||    
T  54619417 aaaaataaaccaccattatactggatataaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 54619503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 38681207 - 38681413
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38681207 ccaaaatcaagaggaactaattctaataatcctaaaagagaccaatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 38681306  T
Q  101 aaaaagaaaccactattatac----tggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggac 195  Q
    ||||||||||||| |||||||    |||||||         |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||    
T  38681307 aaaaagaaaccaccattatactggatggatataaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggac 38681406  T
Q  196 gcccctg 202  Q
    |||||||    
T  38681407 gcccctg 38681413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 29620506 - 29620567
Alignment:
Q  5 aatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaata 66  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  29620506 aatcaagaggaactaattttaataatcctaaaagaggcacatccttgtgagggaatgaaata 29620567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 47467646 - 47467582
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccctcagggacgcccctg 202  Q
    |||||||||||||| || ||||| || ||||||||| ||||||||||||||||||||||||||||    
T  47467646 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccctcagggacgcccctg 47467582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 18372095 - 18372033
Alignment:
Q  140 aggcccatccttaagagaggcccaactcgtttgaactgtttgcacccctcagggacgcccctg 202  Q
    |||||||||||| || ||| |||| ||||||||||||||||||||||||||| ||||||||||    
T  18372095 aggcccatccttgagggagccccagctcgtttgaactgtttgcacccctcagagacgcccctg 18372033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 42098763 - 42098698
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||||||||||  | |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  42098763 tgaggcccatccttgtgggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 42098698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3954010 - 3954047
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3954010 ccaaaatcaagaggaactaattctaataatcctaaaag 3954047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 13795252 - 13795187
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcac-ccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||||||||| |||||||||| |||||| |||||||||||    
T  13795252 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacgccctcaaggacgcccctg 13795187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18372471 - 18372434
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18372471 ccaaaatcaagaggaactaattctaataatcctaaaag 18372434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 21582733 - 21582668
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||||||||||||| || ||||| ||||||||| ||||||||| |||||||| ||||||||||    
T  21582733 tgaggcccatccttaagggatgcccagctcgtttgagctgtttgcaccccctcagagacgcccctg 21582668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 36605911 - 36605846
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccctcagggacgcccctgg 203  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||||||||   ||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccctttcggacgcccctgg 36605846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 50258735 - 50258800
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||| ||||| ||||||||| |||||||||||||||||||    
T  50258735 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccctcagggacgcccctg 50258800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 3954853 - 3954917
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccct 201  Q
    ||||| |||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  3954853 tgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccct 3954917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 29620618 - 29620665
Alignment:
Q  156 gaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  29620618 gaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 29620665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 53149458 - 53149523
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||||||||||    |||||||| ||||||||| ||||||||| ||||| |||||||||||||    
T  53149458 tgaggcccatccttggtggaggcccagctcgtttgagctgtttgcaccccctgagggacgcccctg 53149523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3155205 - 3155003
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3155205 ccaaaatcaagaggaactaattctaataatcctaaaagaggtccatccttgtgagggaatgaaataatcttaggggacctaagagatattaagggggcct 3155106  T
Q  101 aaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    ||||||||||||| ||||||||||||||         |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||||    
T  3155105 aaaaagaaaccaccattatactggatataaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 3155006  T
Q  200 ctg 202  Q
    |||    
T  3155005 ctg 3155003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 4505882 - 4505679
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4505882 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggtctaagagatattaagggggcct 4505783  T
Q  101 aaaaagaaaccactattatactggatat-nnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcc 198  Q
    ||||||||||||| ||||||||||||||          ||||||||||| || || |||||||| ||||||||| ||||||||| |||||||||||||||    
T  4505782 aaaaagaaaccaccattatactggatataaaaaaaaaatgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcc 4505683  T
Q  199 cctg 202  Q
    ||||    
T  4505682 cctg 4505679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 6964995 - 6964794
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6964995 ccaaaatcaagaggaactaattctaataattctaaaagaggcccatccttgtgagggaatgaaataatcttagggagcctaagagatattaagggggcct 6964896  T
Q  101 aaaaagaaaccactattatactggatat-nnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcc 198  Q
    ||||||||||||| ||||||||||||||          |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||    
T  6964895 aaaaagaaaccaccattatactggatataaaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcc 6964796  T
Q  199 cc 200  Q
    ||    
T  6964795 cc 6964794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 8907193 - 8907391
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8907193 ccaaaatcaagaggaattaattctaataatcctaaaagaagcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaaggaggcct 8907292  T
Q  101 aaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcc 198  Q
    ||||||||||||| |||||||| |||||         |||| |||||| || || |||| ||| || |||||| ||||||||| |||||||||||||||    
T  8907293 aaaaagaaaccaccattatactagatataaaaaaaaatgagacccatctttgagggaggtccagcttgtttgagctgtttgcaccccctcagggacgcc 8907391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12337562 - 12337643
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaa 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12337562 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaa 12337643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 34693212 - 34693147
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  34693212 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 34693147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 34715624 - 34715559
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  34715624 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 34715559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 7162742 - 7162677
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||||||||||  | |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  7162742 tgaggcccatccttgtgggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 7162677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 12337690 - 12337755
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || ||||| || ||||||||| ||||||||| |||||||||||||||||||    
T  12337690 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcagggacgcccctg 12337755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 5952949 - 5952993
Alignment:
Q  156 gaggcccaactcgtttgaactgtttgcacccctcagggacgcccc 200  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  5952949 gaggcccagctcgtttgagctgtttgcacccctcagggacgcccc 5952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 40636023 - 40635963
Alignment:
Q  142 gcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccct 201  Q
    |||||||||| || |||||||||||||||||| ||||||||| ||||| ||||||||||||    
T  40636023 gcccatccttgagggaggcccaactcgtttgagctgtttgcacccccttagggacgcccct 40635963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 3399572 - 3399509
Alignment:
Q  140 aggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||| || |||| ||||||||||||| ||||||||| ||||||| |||||||||||    
T  3399572 aggcccatccttgagggaggtccaactcgtttgagctgtttgcaccccctcaaggacgcccctg 3399509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 3952964 - 3952898
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgg 203  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||| ||| |||||||    
T  3952964 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagagacacccctgg 3952898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 12337633 - 12337669
Alignment:
Q  92 agggggcctaaaaagaaaccactattatactggatat 128  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  12337633 agggggcctaaaaagaaaccaccattatactgaatat 12337669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 44655741 - 44655539
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44655741 ccaaaatcaagaggaactaattctaataatcctaaaagaggcacatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 44655642  T
Q  101 aaaaagaaaccactattatactggatatnnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    ||||||||| ||| ||||||||||||||         |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||||    
T  44655641 aaaaagaaatcaccattatactggatataaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 44655542  T
Q  200 ctg 202  Q
    |||    
T  44655541 ctg 44655539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27906830 - 27906911
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaa 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27906830 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaa 27906911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34247048 - 34246981
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataat 68  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  34247048 ccaaaatcaagatgaactaattctaataatcctaaaagagacccatccttgtgagggaataaaataat 34246981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 14146270 - 14146204
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgg 203  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  14146270 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgg 14146204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 6888534 - 6888473
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcc 198  Q
    |||||||||||||| || |||||||||||||||||| ||||||||| |||||||||||||||    
T  6888534 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcc 6888473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 41697284 - 41697346
Alignment:
Q  142 gcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgg 203  Q
    |||||||||| || |||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  41697284 gcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgg 41697346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5316680 - 5316643
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5316680 ccaaaatcaagaggaactaattctaataatcctaaaag 5316643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 6771761 - 6771712
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccc 187  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  6771761 tgaggcccatccttaagggaggcccagctcgtttgagctgtttgcacccc 6771712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 16140025 - 16139960
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||| ||||||||| || |||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  16140025 tgagacccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaaggacgcccctg 16139960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 27906949 - 27907014
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| ||||||| |||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 27907014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 3406388 - 3406323
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||||||||||  | |||||||| ||||||||| ||||||||| ||||||| |||||||||||    
T  3406388 tgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 3406323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 3440432 - 3440497
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||||||||||  | |||||||| ||||||||| ||||||||| ||||||| |||||||||||    
T  3440432 tgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 3440497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50881430 - 50881393
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  50881430 ccaaaattaagaggaactaattctaataatcctaaaag 50881393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 50880614 - 50880567
Alignment:
Q  157 aggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgg 203  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  50880614 aggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgg 50880567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 18776879 - 18777084
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18776879 ccaaaaacaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggtct 18776978  T
Q  101 aaaaagaaaccactattatactggatat---nnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacc-cctcagggacg 196  Q
    ||||||||||||| ||||||||||||||            |||||||||||||| || |||||||| ||||||||| ||||||||||| |||||||||||    
T  18776979 aaaaagaaaccaccattatactggatataaaaaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctcagggacg 18777078  T
Q  197 cccctg 202  Q
    ||||||    
T  18777079 cccctg 18777084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 40357471 - 40357538
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataat 68  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  40357471 ccaaaatcaagatgaactaattctaataatcctaaaagagacccatccttgtgagggaataaaataat 40357538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8171652 - 8171689
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8171652 ccaaaatcaagaggaactaattctaataatcctaaaag 8171689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 10955443 - 10955378
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||||||||||||| || |||||| ||||||| |||||||||||    
T  10955443 tgaggcccatccttgagggaggcccaactcgtttgagctatttgcaccccctcaaggacgcccctg 10955378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 12596430 - 12596495
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||| |||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  12596430 tgagggccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 12596495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 28749646 - 28749582
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccct 201  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||| |||||||||    
T  28749646 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagagacgcccct 28749582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 44487843 - 44487806
Alignment:
Q  206 taactagatcgtcaaaataacataacaatattattgga 243  Q
    |||||||||||||||||||||||||||||||| |||||    
T  44487843 taactagatcgtcaaaataacataacaatattgttgga 44487806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29077209 - 29077172
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  29077209 ccaaaatcaagaggaactaattctaacaatcctgaaag 29077172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 38209704 - 38209894
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38209704 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagagaatgaaataatcttagggggcctaagagatattaagggggcct 38209803  T
Q  101 aaaaagaaaccactattatactggatat-nnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccctca 190  Q
    ||||||||||||| |||||||| |||||          |||||||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  38209804 aaaaagaaaccaccattatacttgatataaaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccctca 38209894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 55255263 - 55255182
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaa 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55255263 ccaaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaa 55255182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 10431443 - 10431508
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  10431443 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 10431508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 55255145 - 55255080
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 55255080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 48208515 - 48208453
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    |||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||| ||||    
T  48208515 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggatgccc 48208453  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10978894 - 10978857
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10978894 ccaaaatcaagaggaactaattctaataatcctaaaag 10978857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13460201 - 13460164
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13460201 ccaaaatcaagaggaactaattctaataatcctaaaag 13460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23509911 - 23509948
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23509911 ccaaaatcaagaggaactaattctaataatcctaaaag 23509948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34768687 - 34768724
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34768687 ccaaaatcaagaggaactaattctaataatcctaaaag 34768724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 34769534 - 34769587
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccctcag 191  Q
    |||||||||||||| || |||||||||||||||||| || ||||||||||||||    
T  34769534 tgaggcccatccttgagggaggcccaactcgtttgagctatttgcacccctcag 34769587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 47128046 - 47127981
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||||||||  ||||||||| |||||||||||||||||||    
T  47128046 tgaggcccatccttgagggaggcccagctcgtttgggctgtttgcaccccctcagggacgcccctg 47127981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47128981 - 47128944
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47128981 ccaaaatcaagaggaactaattctaataatcctaaaag 47128944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 13459849 - 13459786
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccc 200  Q
    ||||||||||||||||| ||||| || ||||||||| ||||||||| ||||||||| |||||||    
T  13459849 tgaggcccatccttaagggaggctcagctcgtttgagctgtttgcaccccctcaggaacgcccc 13459786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 32915344 - 32915297
Alignment:
Q  156 gaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  32915344 gaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 32915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 17679282 - 17679220
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    |||||||||||||| || ||||| || ||||||||| ||||||||| ||||||||||||||||    
T  17679282 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcagggacgccc 17679220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 1105496 - 1105447
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccc 187  Q
    |||||||||||||| || |||||||| ||||||||| |||||||||||||    
T  1105496 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 1105447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 5128984 - 5129049
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||| |||||| || |||||||| ||||||||| ||||||||| ||||||||| |||||||||    
T  5128984 tgaggcctatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcccctg 5129049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10428318 - 10428355
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10428318 ccaaaatcaagaggaactaattataataatcctaaaag 10428355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 37514623 - 37514558
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||||||||||    |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  37514623 tgaggcccatccttggaggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 37514558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 45560705 - 45560770
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||||||||| || || |||||||| ||||||||| ||||||||| ||||||| |||||||||||    
T  45560705 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 45560770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 30083405 - 30083362
Alignment:
Q  70 ttagggggcctaagagatattaagggggcctaaaaagaaaccac 113  Q
    |||||||| |||||||||||||||||  ||||||||||||||||    
T  30083405 ttagggggtctaagagatattaagggcccctaaaaagaaaccac 30083362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 48209234 - 48209201
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatccta 34  Q
    |||||||||||| |||||||||||||||||||||    
T  48209234 ccaaaatcaagaagaactaattctaataatccta 48209201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 34756478 - 34756664
Alignment:
Q  2 caaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatcttagggggcctaagagatattaagggggccta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34756478 caaaatcaagaggaactaattctaataatcctaaaagaggcccatccttgtgagggaatgaaataatctta-ggggcctaagagatattaagggggccta 34756576  T
Q  102 aaaagaaaccactattatactggatat--nnnnnnnnntgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacccc 187  Q
    |||||||||||| ||||||||||||||           |||||||||||||| || |||||||| ||||||||| |||||||||||||    
T  34756577 aaaagaaaccaccattatactggatataaaaaaaaaaatgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 34756664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 36188020 - 36188082
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgccc 199  Q
    |||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||||    
T  36188020 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgccc 36188082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 15480230 - 15480295
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  15480230 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 15480295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 19523158 - 19523093
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  19523158 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 19523093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 16592846 - 16592912
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgg 203  Q
    ||||||||||||||||  |||| ||| ||||||||| ||||||||| ||||||||||||||||||||    
T  16592846 tgaggcccatccttaaaggaggtccagctcgtttgagctgtttgcaccccctcagggacgcccctgg 16592912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16592185 - 16592222
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16592185 ccaaaatcaagaggaactaattctaataatcctaaaag 16592222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 31881591 - 31881656
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||| |||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  31881591 tgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 31881656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 2274863 - 2274798
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||| |||||||| || |||||||||||| ||||| ||||||||| ||||||||| |||||||||    
T  2274863 tgaggtccatccttgagggaggcccaactcatttgagctgtttgcaccccctcaggaacgcccctg 2274798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 22987470 - 22987534
Alignment:
Q  140 aggcccatccttaagagaggcccaactcgtttgaactgtttgca--cccctcagggacgcccctg 202  Q
    ||||||||| || || |||||||| ||||||||| |||||||||  |||||||||||||||||||    
T  22987470 aggcccatctttgagggaggcccagctcgtttgagctgtttgcacccccctcagggacgcccctg 22987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 22986660 - 22986694
Alignment:
Q  3 aaaatcaagaggaactaattctaataatcctaaaa 37  Q
    ||||| |||||||||||||||||||||||||||||    
T  22986660 aaaattaagaggaactaattctaataatcctaaaa 22986694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 30853331 - 30853265
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctgg 203  Q
    ||||| |||||||| |  |||||||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  30853331 tgaggtccatccttgaaggaggcccagctcgtttgagctgtttgcaccccctaagggacgcccctgg 30853265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 30854311 - 30854282
Alignment:
Q  9 aagaggaactaattctaataatcctaaaag 38  Q
    ||||||||||||||||||||||||||||||    
T  30854311 aagaggaactaattctaataatcctaaaag 30854282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 31194768 - 31194833
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgcacc-cctcagggacgcccctg 202  Q
    |||||||||||||| |||||||||||  ||||||||  |||||||||| |||| || |||||||||    
T  31194768 tgaggcccatccttgagagaggcccagttcgtttgagttgtttgcacctcctctggaacgcccctg 31194833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 1076 - 1011
Alignment:
Q  138 tgaggcccatccttaagagaggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    ||||| |||||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  1076 tgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1332 - 1295
Alignment:
Q  1 ccaaaatcaagaggaactaattctaataatcctaaaag 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  1332 ccaaaatcaagaggaactaattttaataatcctaaaag 1295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 181480 - 181435
Alignment:
Q  158 ggcccaactcgtttgaactgtttgca-cccctcagggacgcccctg 202  Q
    |||||| ||||||||| ||||||||| |||||||||||||||||||    
T  181480 ggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 181435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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