View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_78 (Length: 247)

Name: NF0875_low_78
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_78
NF0875_low_78
[»] chr6 (20 HSPs)
chr6 (1-160)||(26950170-26950330)
chr6 (3-102)||(31288791-31288890)
chr6 (3-86)||(26975453-26975536)
chr6 (3-86)||(26636148-26636231)
chr6 (3-86)||(26742114-26742197)
chr6 (3-86)||(25074372-25074455)
chr6 (3-80)||(26959634-26959711)
chr6 (3-86)||(25074191-25074274)
chr6 (160-236)||(26959437-26959513)
chr6 (160-226)||(26635971-26636037)
chr6 (160-226)||(26741937-26742003)
chr6 (160-225)||(26975334-26975399)
chr6 (160-236)||(26949932-26950008)
chr6 (5-80)||(27664804-27664879)
chr6 (161-225)||(26848942-26849006)
chr6 (5-70)||(24716103-24716168)
chr6 (163-226)||(26937387-26937450)
chr6 (185-236)||(27214691-27214742)
chr6 (185-236)||(27234486-27234537)
chr6 (171-236)||(25071930-25071995)
[»] chr2 (2 HSPs)
chr2 (3-87)||(17992812-17992896)
chr2 (171-236)||(17993535-17993600)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26950330 - 26950170
Alignment:
Q  1 cgcgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaataatgacactgataaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||||||||    
T  26950330 cgcgttcatattcatttctgtccaatcataaatatttaaataaatgcatcagaataactactacatatatatattgatatataataatgacactgataaa 26950231  T
Q  101 atcgcgttcatattgattttggtccaattataata-tttccattcaaattgttacagcata 160  Q
    |||| ||||||||||||||  || ||||||||||| |||  ||||||||||||||| ||||    
T  26950230 atcgtgttcatattgatttatgttcaattataatatttttaattcaaattgttacaacata 26950170  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 31288890 - 31288791
Alignment:
Q  3 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaataatgacactgataaaat 102  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| |||||| ||||    
T  31288890 cgttcatattcatttatgtccaatcataaatatttaaataaatgcatcagaataactatcacaaatatgtatttacatataataatgagactgatgaaat 31288791  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 26975536 - 26975453
Alignment:
Q  3 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 86  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||    
T  26975536 cgttcatattcatttctgtccaatcataaatatttaaatacatgcatcagaataacaatcacatatatgtactgatatataata 26975453  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 26636231 - 26636148
Alignment:
Q  3 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 86  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||| |||||    
T  26636231 cgttcatattcatttctgtccaatcatgaatatttaaatacatgtatcagaataacaatcacgtatatgtattgatatataata 26636148  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 26742197 - 26742114
Alignment:
Q  3 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 86  Q
    ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||| |||||    
T  26742197 cgttcatattcatttctgtccaatcatgaatatttaaatacatgtatcagaataacaatcacgtatatgtattgatatataata 26742114  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 25074455 - 25074372
Alignment:
Q  3 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 86  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| |||||||  ||||||||||||| ||||||| |||||    
T  25074455 cgttcatattcatttctgtccaatcataaatatttaaatacatgcattagaataataatcacatatatgtcttgatatataata 25074372  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 26959711 - 26959634
Alignment:
Q  3 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatat 80  Q
    |||||||| |||||||||||||||||| |||||||||||| ||| || |||||||| |||||||||||||||||||||    
T  26959711 cgttcatactcatttctgtccaatcataaatatttaaatacatgtattagaataacaatcacatatatgtattgatat 26959634  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 25074274 - 25074191
Alignment:
Q  3 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaata 86  Q
    ||||||||||||||| |||||||||||  |||||||| || | |||| |||||| | |||||||||||||||||||||||||||    
T  25074274 cgttcatattcatttatgtccaatcatagatatttaactatacgcattagaatagcaatcacatatatgtattgatatgtaata 25074191  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 26959513 - 26959437
Alignment:
Q  160 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 236  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||  ||||||||    
T  26959513 agggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgct 26959437  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 26636037 - 26635971
Alignment:
Q  160 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttc 226  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||    
T  26636037 agggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttc 26635971  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 26742003 - 26741937
Alignment:
Q  160 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttc 226  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||    
T  26742003 agggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttc 26741937  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 26975399 - 26975334
Alignment:
Q  160 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccattt 225  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||| |||||| ||||||||||    
T  26975399 agggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccattt 26975334  T

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Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 26950008 - 26949932
Alignment:
Q  160 agggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 236  Q
    |||||||||||||||||||||||  |||| ||||| |||| | ||||| ||||||||||||||||||  ||||||||    
T  26950008 agggtacccaagattgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgct 26949932  T

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Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 27664804 - 27664879
Alignment:
Q  5 ttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatat 80  Q
    |||||||| ||||||||||||||||  ||||||||||| ||| || |||||||| |||||| ||||||||| ||||    
T  27664804 ttcatatttatttctgtccaatcatacatatttaaatagatgtattagaataacaatcacacatatgtattaatat 27664879  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 26849006 - 26848942
Alignment:
Q  161 gggtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccattt 225  Q
    |||||||||| |||||||||||| |||| |||||||||||| | ||| |||||| ||||||||||    
T  26849006 gggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccattt 26848942  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 24716168 - 24716103
Alignment:
Q  5 ttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatat 70  Q
    ||||| ||||||||||||||||||| ||| ||  ||||  |||||||||||||| |||||||||||    
T  24716168 ttcatgttcatttctgtccaatcataaatgttataatacgtgcatcagaataacaatcacatatat 24716103  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 26937450 - 26937387
Alignment:
Q  163 gtacccaagattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttc 226  Q
    ||||||||||||||||||||| ||||  ||||| || || | ||| ||||||||||||||||||    
T  26937450 gtacccaagattgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttc 26937387  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 27214742 - 27214691
Alignment:
Q  185 ccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 236  Q
    |||| |||||||||||| | ||| ||||||||||||||||||| ||||||||    
T  27214742 ccagataagttagcagcttggttaagagctatcttccatttctgcaaccgct 27214691  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 27234486 - 27234537
Alignment:
Q  185 ccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 236  Q
    |||| |||||||||||| | ||| ||||||||||||||||||| ||||||||    
T  27234486 ccagataagttagcagcttggttaagagctatcttccatttctgcaaccgct 27234537  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 25071995 - 25071930
Alignment:
Q  171 gattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 236  Q
    |||||||||| ||||||| |||||||||||| | ||| |||||| |||||||| ||  ||||||||    
T  25071995 gattgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgct 25071930  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 17992812 - 17992896
Alignment:
Q  3 cgttcatattcatttctgtccaatcattaatatttaaataaatgcatcagaataactatcacatatatgtattgatatgtaataa 87  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||||||||||  |||||||||| || ||||||||||||||    
T  17992812 cgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatatacgtcttgatatgtaataa 17992896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 17993535 - 17993600
Alignment:
Q  171 gattgaaatggtgtccagctaagttagcagccttgtttagagctatcttccatttctccaaccgct 236  Q
    ||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||  ||||||||    
T  17993535 gattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgct 17993600  T

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