View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_8 (Length: 544)

Name: NF0875_low_8
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_8
NF0875_low_8
[»] chr7 (14 HSPs)
chr7 (1-534)||(10497640-10498173)
chr7 (1-534)||(10502669-10503202)
chr7 (1-419)||(13335942-13336360)
chr7 (441-531)||(13336699-13336789)
chr7 (441-531)||(10532879-10532969)
chr7 (444-531)||(10532593-10532680)
chr7 (416-531)||(13344568-13344683)
chr7 (416-504)||(10532661-10532749)
chr7 (444-534)||(10500066-10500157)
chr7 (444-534)||(10505095-10505186)
chr7 (416-534)||(13344331-13344449)
chr7 (416-533)||(10500138-10500255)
chr7 (416-533)||(10505167-10505284)
chr7 (444-528)||(13344503-13344587)
[»] chr1 (1 HSPs)
chr1 (1-129)||(25508338-25508466)
[»] chr3 (1 HSPs)
chr3 (416-534)||(35456989-35457110)


Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 10497640 - 10498173
Alignment:
Q  1 gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10497640 gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccacaac 10497739  T
Q  101 cgatttccacaatccctctctacgatgattaccagctctctctagcagatttgctgatcttagtactatcttagctgcttcttctttaatctcagcagga 200  Q
    || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10497740 cggtttccacaatccccctctacgatgattactagctctctctagcagatttgctgatcttagtactatcttagctgcttcttctttaatctcagcagga 10497839  T
Q  201 agttcattgctttccttagtattccaaaaaccagttccaatggatataaatactgaaaagcaagcaggaggatattgtgcatactgtgctgcttgatatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10497840 agttcattgctttccttagtattccaaaaaccagttccaatggatatacatactgaaaagcaagcaggaggatattgtgcatactgtgctgcttgatatt 10497939  T
Q  301 catgaataaagatacctttcatgaaggatagttggtaactttgtaatataacgaatactatgtgtgcaaacattattaggaccaaatataagtgtggcca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10497940 catgaataaagatacctttcatgaaggatagttggtaactttgtaatataacgaatactatgtgtgcaaacattattaggaccaaatataagtgtggcca 10498039  T
Q  401 tgacctcctacctaaataggtgcagctcgtctaaaatccgtagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagt 500  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10498040 tgacctcctacctaaataggtgcagctcgtctaaaatccatagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagt 10498139  T
Q  501 ctaatgtttctggggctcctaaattccttctctg 534  Q
    |||||||||||||||||||||||||||| |||||    
T  10498140 ctaatgtttctggggctcctaaattcctcctctg 10498173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 10502669 - 10503202
Alignment:
Q  1 gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10502669 gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccacaac 10502768  T
Q  101 cgatttccacaatccctctctacgatgattaccagctctctctagcagatttgctgatcttagtactatcttagctgcttcttctttaatctcagcagga 200  Q
    || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10502769 cggtttccacaatccccctctacgatgattactagctctctctagcagatttgctgatcttagtactatcttagctgcttcttctttaatctcagcagga 10502868  T
Q  201 agttcattgctttccttagtattccaaaaaccagttccaatggatataaatactgaaaagcaagcaggaggatattgtgcatactgtgctgcttgatatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10502869 agttcattgctttccttagtattccaaaaaccagttccaatggatatacatactgaaaagcaagcaggaggatattgtgcatactgtgctgcttgatatt 10502968  T
Q  301 catgaataaagatacctttcatgaaggatagttggtaactttgtaatataacgaatactatgtgtgcaaacattattaggaccaaatataagtgtggcca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10502969 catgaataaagatacctttcatgaaggatagttggtaactttgtaatataacgaatactatgtgtgcaaacattattaggaccaaatataagtgtggcca 10503068  T
Q  401 tgacctcctacctaaataggtgcagctcgtctaaaatccgtagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagt 500  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10503069 tgacctcctacctaaataggtgcagctcgtctaaaatccatagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagt 10503168  T
Q  501 ctaatgtttctggggctcctaaattccttctctg 534  Q
    |||||||||||||||||||||||||||| |||||    
T  10503169 ctaatgtttctggggctcctaaattcctcctctg 10503202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 13335942 - 13336360
Alignment:
Q  1 gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccataac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13335942 gtaaagcatacaaaacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccacaac 13336041  T
Q  101 cgatttccacaatccctctctacgatgattaccagctctctctagcagatttgctgatcttagtactatcttagctgcttcttctttaatctcagcagga 200  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13336042 cggtttccacaatccctctctacgacgattaccagctctctctagcagatgagctgatcttagtactatcttagctgcttcttctttaatctcagaagga 13336141  T
Q  201 agttcattgctttccttagtattccaaaaaccagttccaatggatataaatactgaaaagcaagcaggaggatattgtgcatactgtgctgcttgatatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13336142 agttcattgctttccttagtattccaaaaaccagttccaatggatatacatactgaaaagcaagcaggaggatattgtgcatactgtgctgcttgatatt 13336241  T
Q  301 catgaataaagatacctttcatgaaggatagttggtaactttgtaatataacgaatactatgtgtgcaaacattattaggaccaaatataagtgtggcca 400  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13336242 tttgaataaagatacctttcatgaaggatagttggtaactttgtaatataacgaatactatgtgtgcaaacattattaggaccaaatataactgtggcca 13336341  T
Q  401 tgacctcctacctaaatag 419  Q
    ||||||||| |||||||||    
T  13336342 tgacctccttcctaaatag 13336360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 441 - 531
Target Start/End: Original strand, 13336699 - 13336789
Alignment:
Q  441 tagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttctggggctcctaaattccttct 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||||||||||||    
T  13336699 tagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaaactatctgggactcctaaattccttct 13336789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 441 - 531
Target Start/End: Original strand, 10532879 - 10532969
Alignment:
Q  441 tagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttctggggctcctaaattccttct 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||| || ||||||||||||    
T  10532879 tagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaaacttcctggggttcataaattccttct 10532969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 444 - 531
Target Start/End: Complemental strand, 10532680 - 10532593
Alignment:
Q  444 tttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttctggggctcctaaattccttct 531  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||    
T  10532680 tttaggcgagctccacctatggttagagtgaagaagatgtttgaggacatgttcagtctaaacttcctggggctcctaaattccttct 10532593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 531
Target Start/End: Original strand, 13344568 - 13344683
Alignment:
Q  416 ataggtgcagctcgtctaaaatccgtagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttctgggg 515  Q
    |||| |||||||||||||||||||  ||||||||||||| |||  |||||||||| ||||||||||||||||||||||||| | |||||  ||  ||||     
T  13344568 atagttgcagctcgtctaaaatcctaagtttagacgagctccattaatggttagaatgaagaagatgtttgaggacatattaaatctaaacttcttgggt 13344667  T
Q  516 ctcctaaattccttct 531  Q
    |||| |||||||||||    
T  13344668 ctccaaaattccttct 13344683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 504
Target Start/End: Original strand, 10532661 - 10532749
Alignment:
Q  416 ataggtgcagctcgtctaaaatccgtagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaa 504  Q
    ||||||| |||||| ||||||| | |||||||||||||||| |||||||||||||||| | ||||||||||||||||  ||||||||||    
T  10532661 ataggtggagctcgcctaaaattcttagtttagacgagccctaccaatggttagagtgtataagatgtttgaggacacgttcagtctaa 10532749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 444 - 534
Target Start/End: Complemental strand, 10500157 - 10500066
Alignment:
Q  444 tttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttct-ggggctcctaaattccttctctg 534  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||  ||||| |||| ||||||| ||||||||||    
T  10500157 tttagacgagctccacctatggttagagtggagaagatgtttgaggacatgttcagtctaaactttctgggggatcctaaactccttctctg 10500066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 444 - 534
Target Start/End: Complemental strand, 10505186 - 10505095
Alignment:
Q  444 tttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttct-ggggctcctaaattccttctctg 534  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||  ||||| |||| ||||||| ||||||||||    
T  10505186 tttagacgagctccacctatggttagagtggagaagatgtttgaggacatgttcagtctaaactttctgggggatcctaaactccttctctg 10505095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 416 - 534
Target Start/End: Original strand, 13344331 - 13344449
Alignment:
Q  416 ataggtgcagctcgtctaaaatccgtagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttctgggg 515  Q
    ||||||| |||||| |||||||   |||||||||||||||| |||||||||||||||| | ||||||||||||||||  ||||||||||  ||  |||||    
T  13344331 ataggtggagctcgcctaaaataattagtttagacgagccctaccaatggttagagtgtataagatgtttgaggacaggttcagtctaaacttcatgggg 13344430  T
Q  516 ctcctaaattccttctctg 534  Q
     |||| |||| ||||||||    
T  13344431 ttcctcaattacttctctg 13344449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 533
Target Start/End: Original strand, 10500138 - 10500255
Alignment:
Q  416 ataggtgcagctcgtctaaaatccgtagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttctgggg 515  Q
    ||||||| |||||||||||||||| |||||||||||||| | |||||||||||||||| | | ||||||||| ||||  ||| ||||||  ||  |||||    
T  10500138 ataggtggagctcgtctaaaatccttagtttagacgagctctaccaatggttagagtgtatatgatgtttgacgacacgttcggtctaaacttcatgggg 10500237  T
Q  516 ctcctaaattccttctct 533  Q
    ||||| |||| |||||||    
T  10500238 ctcctcaattacttctct 10500255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 533
Target Start/End: Original strand, 10505167 - 10505284
Alignment:
Q  416 ataggtgcagctcgtctaaaatccgtagtttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttctgggg 515  Q
    ||||||| |||||||||||||||| |||||||||||||| | |||||||||||||||| | | ||||||||| ||||  ||| ||||||  ||  |||||    
T  10505167 ataggtggagctcgtctaaaatccttagtttagacgagctctaccaatggttagagtgtatatgatgtttgacgacacgttcggtctaaacttcatgggg 10505266  T
Q  516 ctcctaaattccttctct 533  Q
    ||||| |||| |||||||    
T  10505267 ctcctcaattacttctct 10505284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 528
Target Start/End: Complemental strand, 13344587 - 13344503
Alignment:
Q  444 tttagacgagccccaccaatggttagagtgaagaagatgtttgaggacatattcagtctaatgtttctggggctcctaaattcct 528  Q
    |||||||||||  || | |||||||||||| ||||||| ||||||||||  ||||||||||  || ||||||||| |||||||||    
T  13344587 tttagacgagctgcaactatggttagagtggagaagatatttgaggacacgttcagtctaaacttcctggggctcataaattcct 13344503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 25508338 - 25508466
Alignment:
Q  1 gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattccatttggacagacgattcctcactgcatccataac 100  Q
    |||||| |||||||||| |||| | |||||||||| ||||||||||  ||||| |||||||||||||||| ||||  |||||| ||||| |||| ||| |    
T  25508338 gtaaaggatacaagacataatttaggaggacaattctaccaccaattaataagtgtctattattccatttagacaaccgattcatcactacatcgatagc 25508437  T
Q  101 cgatttccacaatccctctctacgatgat 129  Q
     | ||||||||| || |||| ||||||||    
T  25508438 tggtttccacaacccatctcaacgatgat 25508466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 416 - 534
Target Start/End: Original strand, 35456989 - 35457110
Alignment:
Q  416 ataggtgcagctcgtctaaaatccgtagtttagacgagccccaccaatggt----tagagtgaagaagatgtttgaggacatattcagtctaatgtttct 511  Q
    ||||||| || ||||||||||||| ||||||||||||||| ||||||||||    ||||||| |||||||||||||||  |||||||||||||  || ||    
T  35456989 ataggtggagatcgtctaaaatccttagtttagacgagccacaccaatggttatatagagtggagaagatgtttgagg--atattcagtctaaacttcct 35457086  T
Q  512 gg-ggctcctaaattccttctctg 534  Q
    || ||||||| |||||||| ||||    
T  35457087 ggaggctcctcaattccttttctg 35457110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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