View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0875_low_80 (Length: 242)

Name: NF0875_low_80
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0875_low_80
NF0875_low_80
[»] chr6 (21 HSPs)
chr6 (1-210)||(26975730-26975939)
chr6 (1-210)||(26950522-26950731)
chr6 (1-213)||(26849491-26849703)
chr6 (1-210)||(25074646-25074855)
chr6 (1-210)||(26636425-26636634)
chr6 (1-210)||(26742391-26742600)
chr6 (1-207)||(26959905-26960109)
chr6 (1-210)||(31289047-31289257)
chr6 (2-209)||(27664400-27664607)
chr6 (3-176)||(26724349-26724522)
chr6 (8-210)||(26812314-26812516)
chr6 (3-178)||(29843213-29843388)
chr6 (74-176)||(26618509-26618611)
chr6 (2-99)||(28097748-28097845)
chr6 (3-89)||(26618421-26618506)
chr6 (1-101)||(28140314-28140414)
chr6 (3-180)||(29826767-29826944)
chr6 (43-174)||(26892820-26892951)
chr6 (42-180)||(28296964-28297102)
chr6 (42-180)||(28514971-28515109)
chr6 (137-180)||(27576189-27576232)
[»] chr2 (2 HSPs)
chr2 (1-210)||(17992409-17992618)
chr2 (3-180)||(3280440-3280617)
[»] chr1 (1 HSPs)
chr1 (3-210)||(26136669-26136876)
[»] chr5 (1 HSPs)
chr5 (3-180)||(16691648-16691825)
[»] chr4 (1 HSPs)
chr4 (2-72)||(5090285-5090355)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 26975730 - 26975939
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  26975730 caagcagtttataatttgattgctaatcaatttgaatgtaactgtttccttcacgatgtgagagaaaattcagttaaacatggcttagagtatctccaag 26975829  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagtttt 200  Q
    |||| |||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||||| |||| | | |||||| ||||||||    
T  26975830 agcaactcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggctatatcagaagaaagtttt 26975929  T
Q  201 gttgattctc 210  Q
    ||||||||||    
T  26975930 gttgattctc 26975939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 26950522 - 26950731
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    ||||||||||||||  |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  26950522 caagcagtttataacttgattgctaatcaatttgaatgcaaatgttttcttcacaatgtgagagaaaattcagtaaaacatggcttagagtatctccaag 26950621  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagtttt 200  Q
    ||||||||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||||| |||| | | |||||| ||||||||    
T  26950622 agcagctcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggctatatcagaagaaagtttt 26950721  T
Q  201 gttgattctc 210  Q
    ||||||||||    
T  26950722 gttgattctc 26950731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 26849491 - 26849703
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||    
T  26849491 caagcagtttataattcgattgctgatcaatttgaatgtaagtgtttccttcacgatgtgagagaaaattcacttaaacatggcttagagtttctccaag 26849590  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagtttt 200  Q
    ||||||||||||||||||||||| ||||  ||||| |||| |||||||||||||||||||||||| ||||||||| |||| | | |||||| ||||||||    
T  26849591 agcagctcctctccaaatcaatcagatttgaaactaagtttggacatgttaatgaaggaattccagtcataaaacgaaggctatctcagaagaaagtttt 26849690  T
Q  201 gttgattctcaat 213  Q
    |||||||||||||    
T  26849691 gttgattctcaat 26849703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 25074646 - 25074855
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  25074646 caagcaatttataatttgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttcaacatggcttagagtatcttcaag 25074745  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagtttt 200  Q
    ||||||| ||||  ||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||| | |||| | ||||| || ||||||||    
T  25074746 agcagcttctctttaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaagcgaaggctatgtcaaaagaaagtttt 25074845  T
Q  201 gttgattctc 210  Q
    ||||||||||    
T  25074846 gttgattctc 25074855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 26636425 - 26636634
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    |||||| |||||||| ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26636425 caagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagttaaacatggcttagagtatctccaag 26636524  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagtttt 200  Q
    ||||| ||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||||| ||||||||| |||| | | | |||| |||| |||    
T  26636525 agcagatcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccagtcataaaacgaaggctatattagaagaaagattt 26636624  T
Q  201 gttgattctc 210  Q
    ||||||||||    
T  26636625 gttgattctc 26636634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 26742391 - 26742600
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    |||||| |||||||| ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26742391 caagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagttaaacatggcttagagtatctccaag 26742490  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagtttt 200  Q
    ||||| ||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||||| ||||||||| |||| | | | |||| |||| |||    
T  26742491 agcagatcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccagtcataaaacgaaggctatattagaagaaagattt 26742590  T
Q  201 gttgattctc 210  Q
    ||||||||||    
T  26742591 gttgattctc 26742600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 26959905 - 26960109
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    |||||||||||||||  ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26959905 caagcagtttataattcgattgttcatcaatttgaatttaagtgtttccttcacaatgtgagagaaaattcagttaaacatggcttagagtatctccaag 26960004  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagtttt 200  Q
    ||  | ||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||||| |||| | | |||||| ||||||||    
T  26960005 ag--gatcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggctatatcagaagaaagtttt 26960102  T
Q  201 gttgatt 207  Q
    |||||||    
T  26960103 gttgatt 26960109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31289047 - 31289257
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    |||||| ||||||||  ||||  | |||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||||||||||||||||||||    
T  31289047 caagcaatttataattcgattattgatcaatttgaatgtaagtgtttccttcacattgtgagagaaaatgctgttaaacatggcttagagtatctccaag 31289146  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaa-caaaggatgtgtcagaaaaaagttt 199  Q
    ||||||||||||||||||||||||||||  |||  ||||| ||||||||||||||||||||| |||||||||||  || || | | |||||| ||||| |    
T  31289147 agcagctcctctccaaatcaatcggatttgaaagacagtttggacatgttaatgaaggaatttcaatcataaaatgaagggctatctcagaagaaagtgt 31289246  T
Q  200 tgttgattctc 210  Q
    |||||||||||    
T  31289247 tgttgattctc 31289257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 27664607 - 27664400
Alignment:
Q  2 aagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaaga 101  Q
    ||||||||||||||   |||| ||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||| || ||||| |||||||||||||    
T  27664607 aagcagtttataattcaattgttaatcaatttgaatgtaggtgtttcctttacaatgttagagaaaattcatttaaacatagcttaaagtatctccaaga 27664508  T
Q  102 gcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagttttg 201  Q
    ||||||||||||||||||||||||||   | || | | ||| ||||| |||||||||||||  |||||||||||||||| | |||| ||| |||||||||    
T  27664507 gcagctcctctccaaatcaatcggatatgacaccccgctagaacatgataatgaaggaattgaaatcataaaacaaaggctatgtcggaagaaagttttg 27664408  T
Q  202 ttgattct 209  Q
    ||||||||    
T  27664407 ttgattct 27664400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 26724349 - 26724522
Alignment:
Q  3 agcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagag 102  Q
    |||||||||| || |||||||| ||||||||||| |   ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  26724349 agcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaaattcaattaaatatggcttagaatatctccaagag 26724448  T
Q  103 cagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaaca 176  Q
     ||||||||||||||| |||||||||| ||  | |||| ||| |||||| |||||| ||| |||||||||||||    
T  26724449 aagctcctctccaaattaatcggattggaatttaagttcggagatgttagtgaagggatttcaatcataaaaca 26724522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 26812314 - 26812516
Alignment:
Q  8 tttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagagcagct 107  Q
    |||||||| |||||||| ||||||||||  ||  |||||||||||||| |||| ||||||||||| ||||||||||||||||  |||||||  |||| ||    
T  26812314 tttataatttgattgctgatcaatttgatggtttgtgtttccttcacagtgtgcgagaaaattcaattaaatatggcttagaacatctccagaagcaact 26812413  T
Q  108 cctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagttttgttgatt 207  Q
    |||||||||| || |||||  | ||  | | || |||||||||| |||||||||||||||||||||| | ||| ||  ||| || |||||||||||||||    
T  26812414 cctctccaaaacactcggagaggaatttaattttggacatgttagtgaaggaattccaatcataaaagataggctgcatcaaaagaaagttttgttgatt 26812513  T
Q  208 ctc 210  Q
    |||    
T  26812514 ctc 26812516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 29843388 - 29843213
Alignment:
Q  3 agcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagag 102  Q
    |||| |||||||| |||||||| || |||||||||||  |||||| |||||| | | |||||||| ||||| |||| ||||||||||| |||||||||||    
T  29843388 agcaatttataatttgattgctgataaatttgaatgtttgtgttttcttcacgacgggagagaaagttcagctaaacatggcttagagcatctccaagag 29843289  T
Q  103 cagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaa 178  Q
     |||| || |||||| || | |  ||| | | | || ||||| |||||||||||||||||||||| ||||| ||||    
T  29843288 aagcttctttccaaaacagttgatttggacattaagctaggagatgttaatgaaggaattccaataataaagcaaa 29843213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 26618509 - 26618611
Alignment:
Q  74 ttaaatatggcttagagtatctccaagagcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaa 173  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||  | |||| ||| |||||| |||||| ||| ||||||||||    
T  26618509 ttaaatatggcttagaatatctccaagagaagctcctctccaaattaatcggattggaatttaagttcggagatgttagtgaagggatttcaatcataaa 26618608  T
Q  174 aca 176  Q
    |||    
T  26618609 aca 26618611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 28097845 - 28097748
Alignment:
Q  2 aagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaa 99  Q
    |||| ||||||||| | ||||||  |||||||||||||   |||||||||||||||||||||||||||||||  ||| ||||||||||| ||||||||    
T  28097845 aagcggtttataatttcattgctggtcaatttgaatgtgtctgtttccttcacaatgtgagagaaaattcagcaaaacatggcttagagcatctccaa 28097748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 26618421 - 26618506
Alignment:
Q  3 agcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttaga 89  Q
    |||||||||| || |||||||| ||||||||||| |   ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  26618421 agcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagag-aaattcaattaaatatggcttaga 26618506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28140314 - 28140414
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    |||||| |||||||| | |||||  ||||||||||||||  |||||| ||||| ||||||||||||| ||||| |||| ||||||||||  |||||||||    
T  28140314 caagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtgagagaaatttcagctaaacatggcttagaagatctccaag 28140413  T
Q  101 a 101  Q
    |    
T  28140414 a 28140414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 29826767 - 29826944
Alignment:
Q  3 agcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagag 102  Q
    |||| |||||||| |||||| | || ||||||||||   |||||| |||||  |  ||||||||| ||||| |||| ||||||||||  |||||||| ||    
T  29826767 agcaatttataatatgattggtgataaatttgaatgcttgtgttttcttcatgacttgagagaaagttcagctaaacatggcttagaacatctccaacag 29826866  T
Q  103 cagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaagg 180  Q
     |||| || |||||| || | | |||| | ||| || ||||| ||||||| |||||||||||||| ||||| ||||||    
T  29826867 aagcttctttccaaaacagttgaattggacactaagctaggagatgttaacgaaggaattccaataataaagcaaagg 29826944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 26892951 - 26892820
Alignment:
Q  43 tgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagagcagctcctctccaaatcaatcggattgaaaactcagttag 142  Q
    ||||| |||||||| |||||||||||||| |  ||  |||| |||||  | ||||||||| |||||||||| ||| |||| |||||||| | |  |||||    
T  26892951 tgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttag 26892852  T
Q  143 gacatgttaatgaaggaattccaatcataaaa 174  Q
    || ||||  ||||||||||| |||||||||||    
T  26892851 gagatgtggatgaaggaatttcaatcataaaa 26892820  T

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Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 180
Target Start/End: Complemental strand, 28297102 - 28296964
Alignment:
Q  42 gtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagagcagctcctctccaaatcaatcggattgaaaactcagtta 141  Q
    |||||| ||||||||||| || |||||||||| ||||||||| |||||| |||| || ||  ||||||| ||||||| | | | |||| |   | |||||    
T  28297102 gtgttttcttcacaatgtaagggaaaattcagctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacgttaagtta 28297003  T
Q  142 ggacatgttaatgaaggaattccaatcataaaacaaagg 180  Q
    ||| |||| || || ||||||||||||||||| ||||||    
T  28297002 ggagatgtcaacgagggaattccaatcataaagcaaagg 28296964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 180
Target Start/End: Original strand, 28514971 - 28515109
Alignment:
Q  42 gtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagagcagctcctctccaaatcaatcggattgaaaactcagtta 141  Q
    |||||| ||||||||||| || |||||||||| ||||||||| |||||| |||| || ||  ||||||| ||||||| | | | |||| |   | |||||    
T  28514971 gtgttttcttcacaatgtaagggaaaattcagctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacgttaagtta 28515070  T
Q  142 ggacatgttaatgaaggaattccaatcataaaacaaagg 180  Q
    ||| |||| || || ||||||||||||||||| ||||||    
T  28515071 ggagatgtcaacgagggaattccaatcataaagcaaagg 28515109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 27576232 - 27576189
Alignment:
Q  137 agttaggacatgttaatgaaggaattccaatcataaaacaaagg 180  Q
    ||||||||||| | | ||||||||||||||||||||||||||||    
T  27576232 agttaggacatataactgaaggaattccaatcataaaacaaagg 27576189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17992618 - 17992409
Alignment:
Q  1 caagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaag 100  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  17992618 caagcagtttataatttggttgctaatcaatttcaatgtaagtgtttccttcacaatgtgagagaaaattcagtcaaacatggcttagagtatcttcaag 17992519  T
Q  101 agcagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagtttt 200  Q
    ||||||| ||||||||||||||||||||   |||| | || ||||||||||||||||| |||||||||||||| |||||| | ||||| || |||||| |    
T  17992518 agcagcttctctccaaatcaatcggatttgtaactaaatttggacatgttaatgaaggtattccaatcataaagcaaaggctatgtcaaaagaaagttct 17992419  T
Q  201 gttgattctc 210  Q
     |||||||||    
T  17992418 cttgattctc 17992409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 3280440 - 3280617
Alignment:
Q  3 agcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagag 102  Q
    ||||||||||||| | |||||||||||||||||||||   ||||| |||||||||||||||||||||||||  ||| ||||  ||||| |||||||| ||    
T  3280440 agcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaag 3280539  T
Q  103 cagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaagg 180  Q
     |  | || |||||| |  | |||||| | | | |||||||| ||  || ||| ||||||||||||||||| ||||||    
T  3280540 gattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaagg 3280617  T

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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 26136669 - 26136876
Alignment:
Q  3 agcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagag 102  Q
    ||||||||||||| |||||||  ||||||||||| |   ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26136669 agcagtttataatttgattgcggatcaatttgaaggattgtgcttccttcacaatgtgcgagaaaattcagttaaatatggcttagaatatctccaagag 26136768  T
Q  103 cagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaaggatgtgtcagaaaaaagttttgt 202  Q
    ||||||||||||||||||||||||||| | | | ||||||||||||||| | |||||||||||||||||||| ||||| |   ||| || ||| ||||||    
T  26136769 cagctcctctccaaatcaatcggattggagattaagttaggacatgttagtaaaggaattccaatcataaaagaaaggctacatcaaaagaaaattttgt 26136868  T
Q  203 tgattctc 210  Q
    ||||||||    
T  26136869 tgattctc 26136876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 16691648 - 16691825
Alignment:
Q  3 agcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttaaatatggcttagagtatctccaagag 102  Q
    |||| |||||||| |||||||| ||||||||||||||  |||||| |||||  | |||||||||||||||  |||| ||||||||||  |||| |||||     
T  16691648 agcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacgtgagagaaaattcatctaaacatggcttagaacatcttcaagaa 16691747  T
Q  103 cagctcctctccaaatcaatcggattgaaaactcagttaggacatgttaatgaaggaattccaatcataaaacaaagg 180  Q
      |||||| |||||| | || |||||  | | | ||||||||||||||| ||||||||||||||| ||||||||||||    
T  16691748 aggctcctttccaaaaccattggattagacattaagttaggacatgttagtgaaggaattccaataataaaacaaagg 16691825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 5090355 - 5090285
Alignment:
Q  2 aagcagtttataatctgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattca 72  Q
    ||||| |||| ||| | |||||| ||||||||||||||   ||||| |||| |||||||||||||||||||    
T  5090355 aagcaatttacaatttcattgctcatcaatttgaatgtctttgttttcttcccaatgtgagagaaaattca 5090285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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