View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0875_low_9 (Length: 538)
Name: NF0875_low_9
Description: NF0875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0875_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 29 - 526
Target Start/End: Original strand, 53957084 - 53957604
Alignment:
| Q |
29 |
atcctgatcttactttaagtgtggctgctccttttaatgctacagttagccaacaatttttgttcagtaacagattttgttcacccatattaaattttaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
53957084 |
atcctgatcttactttaagtgtggctgctccttttaatgctacagttagccaacaatttttgttcagtaacagatt--gttcacccatattaaatttaaa |
53957181 |
T |
|
| Q |
129 |
aaaataattgacataaaaagtttattttttattggtgggggg-----tcatgttatgactgtaaatcttttgctaattctagcatatatata-------- |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957182 |
aaaataattgacataaaaagtttattttttattggtgggggggggggtcatgttatgactgtaaatcttttgctaattctagcatatatatatatatata |
53957281 |
T |
|
| Q |
216 |
------------ataccccaaaactatgaaccacgaacactcattggattagacgtgtcccaccgacacatataattacactgaatcgtgtccggtgtct |
303 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53957282 |
tatatatatgtaataccccaaaactatgaaccacagacactcattggattagacgtgtcccaccgacaaatataattacactgaatcgtgtccggtgtct |
53957381 |
T |
|
| Q |
304 |
gtgtccgtattcgttcttcatagtctcaaaataattgtattaaataaaagtatgagttgaaataataaaaattactacatgttgcagctgcagcagtgag |
403 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957382 |
gtgtccgtattcgtgcttcatagtctcaaaataattgtattaaataaaagtatgagttgaaataataaaaattactacatgttgcagctgcagcagtgag |
53957481 |
T |
|
| Q |
404 |
agttaggatatcactagcacttgtgccattcatggctgagccaataacacttctaagatcctctttcttagctcccattgattcagctacttttgcacac |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957482 |
agttaggatatcactagcacttgtgccattcatggctgagccaataacacttctaagatcctctttcttagctcccattgattcagctacttttgcacac |
53957581 |
T |
|
| Q |
504 |
tgagcagctaccaaagcaacagc |
526 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
53957582 |
tgagcagctaccaaagcagcagc |
53957604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 17124276 - 17124216
Alignment:
| Q |
227 |
ctatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacact |
285 |
Q |
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|||||||||||| |||||||| ||||||||||||| | |||||| ||||||||||||||| |
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| T |
17124276 |
ctatgaaccacggacactcatcggattagacgtgttcgacaccgatacatataattacact |
17124216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 34691770 - 34691833
Alignment:
| Q |
228 |
tatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
289 |
Q |
| |
|
|||||| |||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
34691770 |
tatgaaacacggacactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34691833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 34714182 - 34714245
Alignment:
| Q |
228 |
tatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
289 |
Q |
| |
|
|||||| |||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
34714182 |
tatgaaacacggacactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34714245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 31855772 - 31855836
Alignment:
| Q |
227 |
ctatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
289 |
Q |
| |
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||||||| |||||||||| || |||||||||||| | ||||||||||| |||||||||||||| |
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| T |
31855772 |
ctatgaagtacgaacactccttagattagacgtgttcgacaccgacacatctaattacactgaat |
31855836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 7171483 - 7171446
Alignment:
| Q |
289 |
tcgtgtccggtgtctgtgtccgtattcgttcttcatag |
326 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |
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| T |
7171483 |
tcgtgtccggtgtctgtgtccgtatccgtgcttcatag |
7171446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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