View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0876_high_11 (Length: 327)
Name: NF0876_high_11
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 31983925 - 31983735
Alignment:
| Q |
30 |
ctttttcatgtcacattcacatttgcataaatggaaatgtagagttgtacaaacgtttttcttttgaggagtcattgtacaatcggtaaaattaaatttt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31983925 |
ctttttcatgtcacattcacatttgcataaatggaaatgtagagttgtacaaacgtttttcttttgaggagtcattgtacaatcggtaaaattaaatttt |
31983826 |
T |
|
| Q |
130 |
gacacaataaatattttattcaattctaatgttatgtttaataaaaataggtgtttttcgttcctcatcaatatatcatataatggacacaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31983825 |
gacacaataaatattttattcaattctaatgttatgtttaataaaaataggtg-ttttcgttcctcatcaatatatcatataatggacacaa |
31983735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 31983712 - 31983656
Alignment:
| Q |
262 |
tctgaatacacaatttctgtatttctttttaataataaaagaaacactgatattctt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31983712 |
tctgaatacacaatttctgtatttctttttaataataaaagaaacactgatattctt |
31983656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3355 times since January 2019
Visitors: 6172