View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_high_2 (Length: 481)
Name: NF0876_high_2
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 29 - 479
Target Start/End: Original strand, 5313232 - 5313686
Alignment:
| Q |
29 |
aaatttgtctcttttgatgcttgaacaaattaacagaactttgtttttcttcaatgataaaataaaagtagggtaagtttttccatgtcttcaaaactat |
128 |
Q |
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| T |
5313232 |
aaatttctctcttttgatgcttgaacaaattaacagaactttgtttttcttcaatgataaaataaaagtagggtaagtttttccatgtcttcaaaactat |
5313331 |
T |
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| Q |
129 |
tatttgtattaggcaaaacagggagaccagattggatttaaacaataataataaaaacaaattctcatcaagcatcgtatccg----acaattctgatac |
224 |
Q |
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| T |
5313332 |
tatttgtattaggcaaaacagggagaccagattggatttaaacaataataataaaaacaaattctcatcaagcatcgtatccgtccgacaattctgaatc |
5313431 |
T |
|
| Q |
225 |
gttgatgtaataatgcacattatagcttcgtaccattaactcatcaagattttcagtgttatacaccatttgataggaatagtaagtgtttggatagtat |
324 |
Q |
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| T |
5313432 |
gttgatgtaataatgcacattatagcttcgtaccattaactcatcaagattttcagtgttatacaccatttgataggaatagtaagtgtttggatagtat |
5313531 |
T |
|
| Q |
325 |
ttagagaaaaaatgatgaacagaacagtcacgagccttgtgttcaatacataatggaatttcacgaacaatgacagtatatcggtcaggtgtatgcttta |
424 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313532 |
ttagagaaaaaatgatgaacagaacagtcgcgagccttgtgttcaatacataatggaatttcacgaacaatgacagtatatcggtcaggtgtatgcttta |
5313631 |
T |
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| Q |
425 |
aattttgcagttgttgaatcctttgaattgaaatttgttcatattcttggagatg |
479 |
Q |
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| T |
5313632 |
aattttgcagttgttgaatcctttgaattgaaatttcttcatattcctgaagatg |
5313686 |
T |
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