View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_high_3 (Length: 469)
Name: NF0876_high_3
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 111 - 459
Target Start/End: Complemental strand, 24885385 - 24885037
Alignment:
| Q |
111 |
ggccactaagcctggttttcttcttctacttcttcatcctcttccccagaagatcgctacattcggtggccgacttcaacgcagattcaagcccttcctt |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24885385 |
ggccactaagcctgattttcttcttctacttcttcatcctcttccccaggagatcgctacattcggtggccgacttcaacgcagattcaagccctttctt |
24885286 |
T |
|
| Q |
211 |
atcgcactcgagctcagccaccctcttagtcaattcctctgcatatttgtgagtagcattaactattcctcgtacttggttagggcctggatttctttgt |
310 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24885285 |
atcgcgctcgagctcagccaccctcttagtcaattcctccgcatatttgtgagtagcattaactattcctcgtgcttggttagggcctggatttctttgt |
24885186 |
T |
|
| Q |
311 |
ctttatgagaaaacttcatgatcacacccatctaaatttcatgcttgtccttgtaatcaacaacgtcggctccaacttggccaaattaagctcaaaggcc |
410 |
Q |
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||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24885185 |
ctttatgagaacactccataatcacacccatctaaatttcatgcttgtccttgtaatcaacaacgtcggctccaacttggccaaattaagctcaaaggcc |
24885086 |
T |
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| Q |
411 |
accttcttattaaagaatctctcaggtcaggcctcgtactcactctctg |
459 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24885085 |
accttcttattaaagaatctctcagctcaggcctcgtactcactctctg |
24885037 |
T |
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