View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_high_7 (Length: 381)
Name: NF0876_high_7
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 92 - 371
Target Start/End: Original strand, 16578717 - 16578996
Alignment:
| Q |
92 |
agtatcctccggagcagatgtagccgaaagtgtagcccagtttgcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaat |
191 |
Q |
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| T |
16578717 |
agtatcctccggagcagatgtagccgaaagtgtagcccagtttgcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaat |
16578816 |
T |
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| Q |
192 |
gttacccttagacaaccagcagcaccaggagctgttgtagcacttcatggaaggtttgatattctatcgttaaccggagcttttctaccgggacctgctc |
291 |
Q |
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| T |
16578817 |
gttacccttagacaacctgcagcaccaggagctgttgtagcacttcatggaaggtttgatattctatcattaaccggagcttttctaccaggacctgctc |
16578916 |
T |
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| Q |
292 |
ctccaggcgcaaccggactaacagtgtacttagccggtggacaagggcaagttgttggtggaagtgttgttggacctttg |
371 |
Q |
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| T |
16578917 |
ctccaggcgcaaccggactcacagtgtacttagccggtggacaagggcaagttgttggtggaagtgttgttggacctttg |
16578996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 102 - 365
Target Start/End: Complemental strand, 32803168 - 32802905
Alignment:
| Q |
102 |
ggagcagatgtagccgaaagtgtagcccagtttgcaagaaggcgacaacgcggggtttgtgttctaagcggtagtggatcagttgcaaatgttaccctta |
201 |
Q |
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||||| ||| |||| ||||||||||| || || ||||| ||||| |||||||| ||||||||||| || || ||||| || || || |||||||| |||| |
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| T |
32803168 |
ggagctgatatagcagaaagtgtagcacaattcgcaaggaggcgtcaacgcggtgtttgtgttctcagtggaagtggctctgtagctaatgttactctta |
32803069 |
T |
|
| Q |
202 |
gacaaccagcagcaccaggagctgttgtagcacttcatggaaggtttgatattctatcgttaaccggagcttttctaccgggacctgctcctccaggcgc |
301 |
Q |
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| T |
32803068 |
gacaaccttcagctcctggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccgggacatttctacctggtcctgctccaccaggttc |
32802969 |
T |
|
| Q |
302 |
aaccggactaacagtgtacttagccggtggacaagggcaagttgttggtggaagtgttgttgga |
365 |
Q |
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||| || || ||||||||| | || || || || || || |||||||| || ||||||||||| |
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| T |
32802968 |
aactggtcttacagtgtacctggctggaggtcagggccaggttgttggaggttgtgttgttgga |
32802905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 364
Target Start/End: Complemental strand, 3332105 - 3332062
Alignment:
| Q |
321 |
ttagccggtggacaagggcaagttgttggtggaagtgttgttgg |
364 |
Q |
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||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
3332105 |
ttagcgggcggacaagggcaggttgttggtggaagtgttgttgg |
3332062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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