View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0876_low_1 (Length: 756)

Name: NF0876_low_1
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0876_low_1
NF0876_low_1
[»] chr5 (1 HSPs)
chr5 (29-756)||(5054261-5054989)


Alignment Details
Target: chr5 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 29 - 756
Target Start/End: Complemental strand, 5054989 - 5054261
Alignment:
Q  29 agatagtagttcatccttcaacaatgggtgttctttggtgtagtctaagaacccgtagacgagaaacatgatcttttgtgggtgtaatcacttaaataaa 128  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  5054989 agatagtagttcatccttcaacactgggtgttctttggtgtagtctaagaacccgcagatgagaaacatgatcttttgtgggtgcaatcacttaaataaa 5054890  T
Q  129 aagagaatcattgtcacacgtgcaagttggccttcat---cttataagttaaacatacaatgaatcaagcacaaacgattaatcatacgtctaatcagtt 225  Q
    ||| |||||||||||||||||||||||||||| ||||   |||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||| |    
T  5054889 aagggaatcattgtcacacgtgcaagttggccatcatgatcttataagttaaacatacgacgaatcaagcacaaacgattgatcatacatctaatcagct 5054790  T
Q  226 aaacacgaaatttcttatcacgtccatacgccgtaatattttacctataaaacaaaaaattaaatcccacctacaaacacttgtttaatgcatatccaca 325  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054789 aaacacgaaatttcgtatcacgtccatacgccgtaatattttacctataaaacaaaaaattaaatcccacctacaaacacttgtttaatgcatatccaca 5054690  T
Q  326 tatattaaactacggaaactaaataaaataataacacattcgatgcactcaataattcatgagtttcatgggtgacacaaaagcacagtgttcctggcag 425  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054689 tatattaaactacggaaactaaataaaataagaacccattcgatgcactcaataattcatgagtttcatgggtgacacaaaagcacagtgttcctggcag 5054590  T
Q  426 ctattcaagaaatgtagttagtacgttactttcttatgggagctattgtttgtagtttactattaactaaatattaaaaatcaagtggttacaaaaagca 525  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054589 ctattcaagaaatttagttagtacgttactttcttatgggagctattgtttgtagtttactattaactaaatattaaaaatcaagtggttacaaaaagca 5054490  T
Q  526 ggtgcatgtgatgatattataagacatgatagtgtcctaacatgaagaaaacaaatagaaagtttcaaacaaatattgtcatgctggacaaactctcacc 625  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054489 ggtgcatgtgatgatattataagacatgataatgtcctaacatgaagaaaacaaatagaaagtttcaaacaaatattgtcatgctggacaaactctcacc 5054390  T
Q  626 cgcgtgtgattcatatgctttctccaaaacaactagctgccaccaactctcacatttcatataagatattggtaattcacaacataggtgtagagttata 725  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  5054389 cgcgtgtgattcatatgctttctccaaaacaactacctgccaccaactctcacatttcatataagatattggtaattcacaacatag--gtagagttata 5054292  T
Q  726 aaatccttctactgtttgtttttaattttgc 756  Q
    |||| | ||||||||||||||||||||||||    
T  5054291 aaattcatctactgtttgtttttaattttgc 5054261  T

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