View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0876_low_10 (Length: 379)

Name: NF0876_low_10
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0876_low_10
NF0876_low_10
[»] chr6 (7 HSPs)
chr6 (28-215)||(1116858-1117046)
chr6 (34-215)||(1121385-1121566)
chr6 (264-342)||(7814905-7814983)
chr6 (115-215)||(1095438-1095541)
chr6 (317-373)||(14435695-14435751)
chr6 (120-168)||(1082559-1082607)
chr6 (120-168)||(1085198-1085246)
[»] chr4 (2 HSPs)
chr4 (28-133)||(8115822-8115927)
chr4 (156-197)||(8115935-8115977)
[»] scaffold1089 (1 HSPs)
scaffold1089 (317-373)||(721-777)
[»] chr7 (1 HSPs)
chr7 (317-373)||(19316700-19316756)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 1116858 - 1117046
Alignment:
Q  28 cacaagattgataatcctccgtaaagcaatgtttcatcgaacaaattggtgcatcaaacaatctctttacttgagtagaggcttcacaatgattgattag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1116858 cacaagattgataatcctccgtaaagcaatgtttcatcgaacaaattggtgtatcaaacaatctctttacttgagtagaggcttcacaatgattgattag 1116957  T
Q  128 caacaaaaagtaatctactcaaacgtgattttaatcaattggagtattg-ttgtgtcaacgaatgtgtatttaatgggatcgcacaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1116958 caacaaaaagtaatctactcaaacgtgattttaatcaattggagtattgtttgtgtcaacgaatgtgtatttaatgggatcgcacaaca 1117046  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 1121385 - 1121566
Alignment:
Q  34 attgataatcctccgtaaagcaatgtttcatcgaacaaattggtgcatcaaacaatctctttacttgagtagaggcttcacaatgattgattagcaacaa 133  Q
    |||||||||||||||  |||||||||||||| ||||| ||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  1121385 attgataatcctccgataagcaatgtttcatggaacagattggtgtatcaatcaatctctttactagagtagaggcttcacattgattgattagaaacaa 1121484  T
Q  134 aaagtaatctactcaaacgtgattttaatcaattggagtattgttgtgtcaacgaatgtgtatttaatgggatcgcacaaca 215  Q
       |||||||||||||||  | ||||||||||||||| |||| |||||| |||||||||||||||||||||| |||||||||    
T  1121485 ggggtaatctactcaaactaggttttaatcaattggaatatttttgtgtaaacgaatgtgtatttaatgggagcgcacaaca 1121566  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 7814905 - 7814983
Alignment:
Q  264 cataaattttgtataaatgttgttttttatctccttgacagtcgaagtatacaagctcatccaagaaatggaaatgccc 342  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |||||||||||||    
T  7814905 catatattttgtataaatgttgttttttatctccttgacagtcgaagaatacaaccttatccaaggaatggaaatgccc 7814983  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 1095438 - 1095541
Alignment:
Q  115 aatgattgattagcaacaaaaagtaatctactcaaacgtgattttaatcaattggagtattgt---tgtgtcaacgaatgtgtatttaatgggatcgcac 211  Q
    ||||||||||||| |||||   ||||||||||||| | ||  |||||||||||||||||||||   ||||||||||||||||||||||||| || |||||    
T  1095438 aatgattgattagaaacaaggggtaatctactcaagcatggctttaatcaattggagtattgtttgtgtgtcaacgaatgtgtatttaatgagagcgcac 1095537  T
Q  212 aaca 215  Q
    ||||    
T  1095538 aaca 1095541  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 14435751 - 14435695
Alignment:
Q  317 agctcatccaagaaatggaaatgcccatcctcggttattgaatgtgtttcatctcac 373  Q
    |||||||||||| |||||||||| |||   |||||||||||||||||||| ||||||    
T  14435751 agctcatccaaggaatggaaatggccaaattcggttattgaatgtgtttcgtctcac 14435695  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 1082559 - 1082607
Alignment:
Q  120 ttgattagcaacaaaaagtaatctactcaaacgtgattttaatcaattg 168  Q
    ||||||| |||||||  ||||| |||||||||||||||||||| |||||    
T  1082559 ttgattaccaacaaagggtaatatactcaaacgtgattttaatgaattg 1082607  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 1085198 - 1085246
Alignment:
Q  120 ttgattagcaacaaaaagtaatctactcaaacgtgattttaatcaattg 168  Q
    ||||||| |||||||  ||||| |||||||||||||||||||| |||||    
T  1085198 ttgattaccaacaaagggtaatatactcaaacgtgattttaatgaattg 1085246  T

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Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 8115822 - 8115927
Alignment:
Q  28 cacaagattgataatcctccgtaaagcaatgtttcatcgaacaaattggtgcatcaaacaatctctttacttgagtagaggcttcacaatgattgattag 127  Q
    ||||| |||||||||||||||  |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8115822 cacaacattgataatcctccgataagcaatgtttcatggaacaaattggtgcatcaaacagtctctttacttgagtagaggcttcacaatgattgattag 8115921  T
Q  128 caacaa 133  Q
    ||||||    
T  8115922 caacaa 8115927  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 8115935 - 8115977
Alignment:
Q  156 ttttaatcaattggagtattgtt-gtgtcaacgaatgtgtatt 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  8115935 ttttaatcaataggagtattgtttgtgtcaacgaatgtgtatt 8115977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 777 - 721
Alignment:
Q  317 agctcatccaagaaatggaaatgcccatcctcggttattgaatgtgtttcatctcac 373  Q
    |||||||||||| |||||||||| |||   |||||| ||||||||||||| ||||||    
T  777 agctcatccaaggaatggaaatggccaaattcggttcttgaatgtgtttcgtctcac 721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 19316756 - 19316700
Alignment:
Q  317 agctcatccaagaaatggaaatgcccatcctcggttattgaatgtgtttcatctcac 373  Q
    |||||||| ||| ||||||||||||||   || ||| ||||||||||||||||||||    
T  19316756 agctcatctaaggaatggaaatgcccaatttcagttcttgaatgtgtttcatctcac 19316700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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