View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0876_low_12 (Length: 339)
Name: NF0876_low_12
Description: NF0876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0876_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 49139493 - 49139656
Alignment:
| Q |
61 |
gtcagaatcattagaaacatcaaaatcaatgaaatcatcacaagatatagaaatatcttcacaggcatccagccagtaaggatttgacgaagaaacccta |
160 |
Q |
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| T |
49139493 |
gtcagaatcattagaaacatcaaaatcaatgatatcatcacaagatatagaaatatcttcacaggcatccagccagtaaggatttgacgaagaaacccta |
49139592 |
T |
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| Q |
161 |
ttgttgttattcgcggcagcg------gcagcggcatcggcatcatcctccataataaataaat |
218 |
Q |
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| T |
49139593 |
ttgttgttattcacggcagcggcggcagcagcggcatcggcatcatcctccataataaataaat |
49139656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 49139691 - 49139760
Alignment:
| Q |
256 |
caaaccctattgctgtgtatcaacgcctattctattctattcaaatcaattcattccgattcactctctc |
325 |
Q |
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| T |
49139691 |
caaaccctattgctgtgtatcaacgcctattctattctattcaattcaattcattccgattcactctctc |
49139760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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